Pseudomonas entomophila: PSEEN2767
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Entry
PSEEN2767 CDS
T00362
Name
(GenBank) putative DNA ligase, ATP-dependent
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pen
Pseudomonas entomophila
Pathway
pen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSEEN2767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pen03400
]
PSEEN2767
Enzymes [BR:
pen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSEEN2767
DNA repair and recombination proteins [BR:
pen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSEEN2767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAK15551
UniProt:
Q1I9X2
LinkDB
All DBs
Position
complement(2904721..2907183)
Genome browser
AA seq
820 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAGKRARPRSAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGVWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQARSETDYSVVEALPDSVL
SERTLPPRRPAKAPAATRKAGRKPLPELLQPQLATLVDSPPSGDWRYEVKFDGYRVLARI
DGDDVRLFTRNGHDWSAKMPRQVKALRALGLDAAWLDGEMVVVGDNGVADFQALQNAFDT
EHDERITYYLFDLPWLGDEDLRELPLQARRATLAKLLEDNASPLLSYSADFTEPVDSLLE
SACRLELEGLIGKRADSPYIGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLLAL
HDHDSGQLRYAGKVGTGFSATTLDSILARLKPLQAAKPPLVSPPTGADVRGVHWLKPHLL
AEVAYAQMTREGIVRHSVFHGLRDDKPATDIDLEQAMPAKRAAQARPEGLPPLRLTHPDR
VIDATTGTTKREVAQYYAQVADWLLPQLKDRPVALVRAPDGLGGELFFQKNPGQLHIPHV
LNYSKAQAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFDRPDRFVLDLDPDPALPW
KAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMAGL
FPDRLSAVSGPKNRVGRIFIDYLRNGRGATTVAAYSLRAREGLPVSVPIWREELTQLKGA
NQWNIGNLLTRLAEVDDPWADMAGTRQSITVRMRKQLGID
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgatttcaacgccacgcccgagccg
gccggcaagcgcgcccgcccccgctcggcccatgcgctgcagtactgcatccagaagcac
gatgccagccacctgcactacgacttccggctggaactcgacggcaccctcaagagctgg
gcgatccccaaggggccctcgctcgatcccaaggtccggcgcctggcggtgcatgtggag
gatcacccgctggattacgccaacttcgaagggcacatccccgaaggccattacggcgcc
ggcgatgtcatcgtctgggaccggggtgtctgggaacccgaaggcgacccgcgcgaagcc
tatgccaagggcaaactgcgctttcgcctgcagggcgagaaactatcgggggtctggaac
ctgttccgcacccacctggccggcaagaaagagcaatggatgctggtcaagtcccatgac
ggacaagcacgcagtgaaactgactacagcgtcgtcgaggccctgccggacagcgtgctg
agcgagcgtaccctgccgccacggcgcccggccaaggcacccgccgccacgcgcaaggcc
ggccgcaagcccctgccggagctgctgcagccgcaactggccacgttggtcgactccccg
cccagcggcgactggcgctacgaagtcaagttcgatggctaccgggtcctggcgcgcatc
gacggtgacgacgtgcgcctgttcacccgcaatggccacgactggagcgcgaagatgccc
cgtcaggtcaaggcgctcagggcactggggctcgatgcggcatggctggacggcgaaatg
gtggtagtcggcgataacggtgtggccgacttccaggccttgcagaacgccttcgacacc
gagcacgacgaacgcatcacctattacctgttcgacttgccctggctgggagacgaggac
ttgcgcgagctgccgctacaggcacgtcgcgccaccctggccaagttgctggaagacaac
gcttcgccgctgctgagctattccgccgacttcacggagccggtcgactcgctgctcgaa
agcgcctgccggctggaactcgaggggctgatcggcaaacgcgccgacagcccctatatc
ggccggcgcagtagcgactggatcaagctcaagtgcaagcagcgccaggaattcgtgatc
gtcggttacaccgaccccaagggcagccgtcatggtttcggcgccctgctgctggccctg
cacgatcacgacagcggccagctgcgctacgccggcaaggtcggcaccggcttcagcgcc
accacgctggacagcatcctcgcccgcctgaagccgctgcaggccgccaagcctcccttg
gtaagcccccctaccggggctgatgtccgcggcgtgcactggctcaagccgcacctgctg
gcggaagtcgcctatgcccagatgacccgcgaaggcatcgtgcgccactcggtgttccac
ggcctgcgcgacgacaaacccgccaccgacatcgatctggagcaagcgatgcccgccaag
cgcgcagcacaggcacgccccgagggcctgccccccctgcgcctgacccaccccgaccgc
gtgatcgacgcaaccaccggcaccaccaagcgcgaggtcgcacagtactacgcccaggtt
gccgactggctgctgccacagctcaaggatcggcctgtagccctggtccgggcgccggat
ggcctgggcggcgaactgttcttccagaaaaaccccggccagctgcatatcccccacgta
ctcaactacagcaaggctcaggcaggccaggcagccatggtgctcaaccgcgccgacagc
ctgctgggcgcggtgcagatgaacatgctcgaactgcacacttggaatgccaccgacaag
gactttgacaggcccgaccgtttcgtcctcgacctcgaccctgatccggcgctgccgtgg
aaagccatgctcgaggccacccagctgaccctcacgctgctagacgagctgggcctgaag
gtgtttctcaagaccagcggcggcaagggcatgcacctcgtcgtgccgttgacccggcgc
gccggctgggacgaggtgaaggacttcagccatgccttggtcgagcacatggccgggctg
ttccccgatcgcctcagtgccgtgtccgggccgaagaaccgggtcgggcggatcttcatc
gactacctgcgcaacggtaggggtgccaccaccgtcgctgcctactcgctgcgcgcccgc
gagggcctgccggtgtcggtgccgatctggcgcgaggaactgacccagctcaaaggcgcc
aaccaatggaacattggcaatctactgacgcggcttgccgaggtggatgatccgtgggct
gacatggccggaacccgccaatcgatcaccgtgcgcatgcgcaagcagctggggattgac
tga
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