Pedobacter sp. PACM 27299: AQ505_00350
Help
Entry
AQ505_00350 CDS
T04140
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AQ505_00350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_00350
Enzymes [BR:
pep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AQ505_00350
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AQ505_00350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALL04076
UniProt:
A0A0P0NAM0
LinkDB
All DBs
Position
105589..108930
Genome browser
AA seq
1113 aa
AA seq
DB search
MNIRDLINTYKTDERIVALAKALNAGKGNKLQLKGLVGSADATIAIAIYFLLHKPMLFVL
PDREEASYFMADLESILDKEVLLFPSSFRKPFEFTQVDTANVLARAEVLNELNHHSEYGK
IVVTYPEALAEKVINRSVLEKNTLEIAVQTKLGIDFINEFLIDYDFERTEFVYEPGQFSI
RGGIVDIFSFSHDLPYRIEFFGDVIESIRTFEIESQLSVEDVKTFTIIPNVQSKYLTESN
INLLDYIEKDTLLWFKDVEFSLDIIKGGYKKAKELWLALPAKEKSENQDWIDPKFAFTDE
KMMADMVHDFSLIEFGKQFFYKTEHVISFETKPQPSFNKDFNLLIHNLKENEKQGIHNYI
FSSSPKQTERLYAILEDIDKTAKFTPVNIPLREGFLDPHQNVAFYTDHQIFDRFYKYKLK
RGYQRSQAITLKELRDLKPGDFVTHIDHGIGKYAGLEKVEVSGKTQEMIRLVYADNDLLY
VNINSLNRIAKYSGKDGTAPKMNKLGTEAWDKLKKNTKKKVKDIARDLIKLYALRKTQVG
TAFAPDGYLETELEASFIYEDTPDQEKATLDVKKDMEAPHPMDRLICGDVGFGKTEIAIR
AAFKAVANGKQAAVLVPTTILALQHFKTFSARLKDFPCTVDYINRFKTNKQIKETLAKLA
EGKVDIVIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTSKEKLRVLRANVDTLTLTATPIP
RTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFNDKLIQEAIQFELDRGGQVFFIHNRVN
DLPQLGGMIQGMVPKARIGIAHGQLDGDALEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKGDEFKDLFKNEPA
RPFVTYTQIDTDLDMFIPDDYVTNITERYNLYTELSKLENETQLKAFETALKDRFGPVPK
PVKTMLNVLRLQWVAKQLAFEKLSFKKGVLRGYFIADKQSAFFDSTMFNQILHFAQMHPR
ICNLKEVKNSLRIAFEGLKSVDEAVEMLNMVAN
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatccgtgacctgataaatacctataaaacagacgaacgcattgtcgcattggca
aaagccctaaacgcgggcaaaggtaataaacttcaactaaaaggtttagttggttctgcc
gatgcaacgatagccattgctatttattttctgctgcataagcccatgttatttgtcctt
cctgatcgggaagaggcttcttatttcatggccgatctggagagtatccttgataaagag
gtgttacttttcccatcttccttccgtaaaccctttgaattcacccaggtagacacagca
aatgtgctggccagggcagaagtcctcaatgagctgaatcaccattcagaatatggcaaa
attgtggtgacgtatccagaggcattggctgaaaaagtgatcaataggagtgtgctggag
aaaaatacgcttgaaattgccgttcagacgaaactaggcattgattttattaatgaattc
ctgattgattacgattttgagcgtacagaattcgtttatgagcccggacaattctccatt
cgtggtgggatagtagatattttctctttctctcatgatttaccttaccgaattgagttt
tttggtgatgtgatcgagagtatacggacctttgagattgaaagtcagctgtctgtagaa
gatgtaaagacttttaccatcatcccaaatgtgcagtccaaatacctgacagaaagcaat
atcaatctgttggattatatagaaaaagacactttactttggtttaaagacgtagagttt
agcctggacatcattaaaggcggttataagaaagcaaaagaactctggctggctttaccg
gcgaaagagaaatcggagaaccaggattggatcgaccctaaatttgctttcactgatgag
aaaatgatggccgatatggtgcatgatttctccttgattgagtttggcaagcagtttttc
tataaaacggagcatgtgatctcctttgagaccaaaccacagccttccttcaataaagat
ttcaatctactcattcacaatttaaaagaaaatgagaagcaggggatccacaattatatt
ttcagttcttctccgaagcaaaccgagcgtttgtatgcgattttagaagacattgataaa
acagcaaagtttacaccggttaatattccattacgggaaggtttcttagatccacaccag
aatgtggccttttataccgaccatcagatctttgaccgtttttataaatacaagctaaaa
agaggctaccagcggagtcaggcgattactttgaaagaattaagagacctgaagcctgga
gattttgtgactcatattgaccatggtattggaaaatatgccggtctggaaaaagtagag
gtgagcggcaagacacaggagatgattcgcctggtttatgccgataacgacttgctgtat
gtaaatatcaactccctaaaccggattgctaaatacagcgggaaggatggaacagctccg
aaaatgaataaactgggcacagaggcctgggataagctaaaaaagaatactaaaaaaaaa
gttaaagacattgccagggatctgattaagctgtatgctttgaggaaaacccaggtaggg
actgcatttgctcctgatggctatctggaaacagaactggaagcttccttcatttatgag
gataccccagatcaggagaaggctaccctggatgttaaaaaagacatggaggcaccacat
ccgatggaccgtctgatttgtggtgatgtgggtttcggcaagaccgaaatcgcgatccga
gctgcttttaaagctgttgccaatgggaaacaggccgcggtactcgtaccaaccaccatt
ctggcattgcagcatttcaaaacgttttctgcccgtctgaaggatttcccttgtacggta
gattatatcaaccgtttcaaaacgaacaagcagatcaaggaaaccctggctaaactagcg
gagggaaaagtagacatcgtaattggcacccacaggctcttgagtaaagatgtcaaattc
aaggatctgggcatcatgatcattgatgaggagcagaaatttggggtaacctccaaagaa
aagttaagggtattgagggcaaacgtagatacgctgaccttaaccgccacaccgattccg
aggactttacatttctcgctgatgggggcaagggatctttcgatcatgagtacgccacca
ccaaaccgtcaggcggtgaatacagaattacatgttttcaatgataaattgattcaggaa
gccattcaatttgagctggataggggtggacaagtattttttatccataaccgggtaaat
gacttaccacaattgggtggtatgatacagggaatggttcctaaagcaaggataggaatt
gcacacggacagctggacggcgatgcactcgaagatgtaatgcttgattttatcaatggt
gaaaaagatgtattggtagccaccacaattattgaggctggtctcgacattccaaatgcg
aataccatcatcatcaaccatgcgcacatgttcggtttaagtgatttacaccagatgcgc
ggcagggtaggacgctccaacaaaaaggcattttgctacttgttaagtccgcccttatct
acgctgacttctgaagccagaaaaagactgagtgccatagaagagttttctgatctgggc
agtggtttcaacatcgccatgcgggatttagacatccgtggcagtggaaacttactagga
gcagagcagagtggtttcatcgctgaaattggctttgaaatgtaccataagatcttagat
gaggccattcaggagctaaaaggcgatgagttcaaggatttatttaagaatgagcctgca
cgtcctttcgtgacctacacacagatagataccgatctggatatgtttattccagatgat
tacgtaacgaatattaccgaaagatataacctgtatacggagctttccaagctggaaaat
gaaacacagctgaaagcttttgaaactgctttaaaagaccgttttgggcctgttccgaag
cctgtaaaaacgatgctgaacgtattgcgcttacaatgggtggccaaacaactggctttt
gaaaagctgagctttaaaaaaggggtcttgcgcggttacttcatcgctgataagcaatct
gctttctttgattcaacaatgttcaatcagatcctgcattttgcacagatgcacccgagg
atctgtaatttaaaagaagtgaaaaactctttacggattgcttttgaaggcttgaaatca
gtagatgaagcggtagaaatgctaaatatggtggctaattaa
DBGET
integrated database retrieval system
