Pedobacter sp. PACM 27299: AQ505_09285
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Entry
AQ505_09285 CDS
T04140
Name
(GenBank) SusC/RagA family TonB-linked outer membrane protein
Organism
pep
Pedobacter sp. PACM 27299
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plug
CarbopepD_reg_2
CarboxypepD_reg
STN
CooC_C
MetallophosN
FecR_C
DUF6476
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
ALL05667
UniProt:
A0A0P0NEL6
LinkDB
All DBs
Position
complement(2217924..2221325)
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AA seq
1133 aa
AA seq
DB search
MKERLHSKVISPYGQKTVRKVFIIMKLSLIILITLGIQVSTASYGQRVTISKRNTSLKSV
LQDLRKQTGYYFIYNNEVISQSKPLNVDLKNTALSTALTEIFKDQPLTYTMEKNIIVVKL
KEAALRTPIAPANLITIQGKVTDDKGIPLPGVTILVKEGKAVAITNADGFYKIQAEDNQT
LIFTYLGFKREEVAIQKRTQINVSMTMSMSELSEAVVIGYGTQQKKLLTGAIGVIKGEEL
TQSPAVNVSNTLMGRVTGLVSYMSTSGTPDRDRSAIKIRGMGEALIVIDGVAREGMGIVG
MEMDKLDPNSIESISVLKDASAAVYGARGANGVILITTKRGKSNKVSMNYNGNFGIQQST
RLPKFLDSYNYAILNNEMFDNDKAEKGSSPRTKYTPEEIQKFKDGSDPDRYPNTDWYKTV
LKDYASVQKHNLSLNGGGNNSRYFISGTYTDQQGLISTSGMKRYGLVSNFDLDVTPTTSL
SVGLNYITENAKNPAVYAESIFSRMSVLGSVSPARFSDGLYAFSGFSGNPLADALDGAGY
NKVGRNIFTSSLRITQQLPFIKGLSANGVVTVDKNNSLTKAFTVPYPVYSLDPLKDEYTQ
QNATEKASLSETVSLNDNVNVQVSLNYKRLFGKHSVTALALYEQNEFKGENIIAERSNYP
VASVDQLFLGDVSTQKSSGSSQENARQSAVARFIYNYNSKYILESNFRYDGSPYYPKGKR
RALFPSLSAAWVLSEEDFIKDHYPFINELKLRTSYGKLGNDGGSLYSYFYNYSLFPAGYV
FGTGNGISPMTRITNTTVPNTNITWEKVKAFDIGLDALLWGGKLGIEADYYSKSKYDILR
SRGYDVPSSFGLSPALENFGKEYYYGYELALSHQSNIGQLNFSARLNMTFTKSRVVDYGE
NESVLPGLRQEGRPVGAGRILKADGIFKDQQDVDNWPKYLTSPGATPVSGKPGDIRYVDL
NGDGVVELFSGSADRDVETRYIVPPTVYGLSLAFKWKNFSADALFQASTGVFINYAPAAD
LTNFYELHLDRWTPEHTDAAYPRLLSNYEANRYPSTFYVKNGNYIKLRTAQLSYSIPKLV
LKQIGVSSLTLTAQGQNLFTISNNRRFDPESSGTFANSYPPQRIFSFGLRLGL
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgactacattctaaagtcatttccccttatggccaaaaaaccgtaagaaaa
gtattcattatcatgaaactatcattgattatcctgattaccttgggtatacaggtaagt
acggcttcctacgggcagcgcgtcaccatttctaagcgcaataccagcttaaaatccgtt
ttgcaagacctgagaaagcaaaccggttattattttatttacaataacgaagtcatcagc
cagtcgaaaccattaaatgtggatttgaaaaacacggccttgagcactgcgctaacagag
attttcaaagatcagcccctaacctacacgatggagaaaaacatcattgtagttaaacta
aaagaagccgctttaaggacacctattgccccggcaaacctcatcacgatccaaggtaaa
gtaaccgacgacaaaggcattccactgcctggtgttacaattttagtgaaagaaggtaaa
gcggtggcgatcacgaatgcagatggattctataaaattcaggcagaagacaaccagact
ttaatctttacctatctaggcttcaaaagagaagaagtcgctatccaaaagagaacgcag
atcaatgtatccatgacgatgagcatgagtgagttgagcgaagcggtagtcattggatac
ggtacacagcaaaagaaactattaaccggtgcaatcggcgtgatcaaaggagaagaactg
acacaatcaccagccgtaaacgtatccaataccttaatgggtagagtaaccggattggta
tcttacatgagtacttcaggtaccccagaccgcgaccgctctgcgatcaaaattcgtgga
atgggtgaagccctgatcgtgattgatggagttgccagagaaggtatgggtattgtaggc
atggaaatggataaattagatcccaactctatcgaaagtattagtgtattaaaagatgct
tcggcagctgtttatggtgccagaggtgccaatggcgtcatcctgatcaccaccaaacgc
ggaaaatccaataaagtatccatgaattacaatggtaatttcgggattcagcaatctaca
agattgcctaaattcctggattcttacaactatgccattttgaacaatgagatgttcgat
aatgataaggcagaaaaaggaagctctccaagaacaaaatatacgcctgaggaaattcag
aaattcaaagacggatcagatccggatcgttatccaaatactgactggtacaaaaccgtg
cttaaagattatgcttctgtacaaaaacacaacctgagtttaaacggtggcggtaataat
tccaggtattttatcagtggaacttacaccgatcagcaaggactcatcagcacttcagga
atgaagcgctatggtttagtcagtaattttgacctggatgttacgccaaccaccagcctt
tctgtaggcttgaattacatcactgaaaatgcgaaaaacccagctgtttatgcggaaagt
attttcagcagaatgtcggttctgggttcggtatcccctgcccgtttctccgatggcttg
tatgctttctctggattttcagggaatcctttagcggatgcattggatggtgccggctat
aataaagtgggtagaaatatctttaccagttcccttagaatcacacagcagctacctttt
atcaaaggtctttctgcaaatggagtggtcacagttgacaaaaacaactccttaaccaaa
gcttttacagtaccttatcctgtgtattcattagatccgctaaaggatgaatatacccag
caaaatgcaacagaaaaagcttcattgagtgaaactgtttcgctgaacgacaacgtaaac
gtacaggtttccctgaactacaaaagactatttggcaagcattccgttacggcattggct
ttatatgagcaaaatgagttcaaaggagaaaatatcatcgcagaaagaagcaattacccg
gttgccagtgtcgaccagctattccttggagatgtgagcacgcaaaaaagttcaggcagc
tcgcaggaaaatgcacgccaaagtgcggttgcccgttttatttacaattacaacagcaaa
tatattttagaaagtaacttcagatacgatggttccccatattatccaaaaggaaaaaga
agagccttgttcccatccttatcagcggcttgggtcctatcagaagaagatttcattaaa
gatcattatcccttcattaatgagttaaaactccgtacttcttacggtaaactgggtaat
gatggtggctctttgtattcttacttttataactacagtcttttcccggcaggttatgta
tttggcactggaaacggcatctctcctatgaccaggattaccaatacaaccgttccaaac
accaacattacttgggaaaaagtgaaagcttttgacatcggtttagatgccttactatgg
ggtggtaaactgggtatcgaagcggattattacagcaaatcaaaatatgacatcctacgt
tcaagaggttacgatgtaccttcttctttcggattgagcccggcattggagaactttgga
aaagaatattactatggatatgagcttgctttatctcatcaaagtaacatcggacaactg
aacttctctgcacgcttaaacatgactttcaccaaaagcagggtcgtagattatggcgaa
aacgagagtgtattgcctggattacgtcaggaaggccgccctgtaggtgccggaagaatc
ctgaaagcagatggtattttcaaagaccagcaggatgtagacaactggccaaaatacctg
accagccctggagcgacgccagtaagcggtaaacctggagacatcaggtatgtggattta
aatggtgatggtgttgtagaattgtttagcggcagtgccgatcgtgatgtggaaaccaga
tatatcgttccaccaacggtttacggtttatcattggctttcaaatggaaaaacttttct
gctgacgccttattccaggcttctacaggggttttcatcaactatgcacctgctgcagat
ttaaccaacttctacgaattacacttagacagatggacgccggaacatacggatgcagct
tacccaagactattgtcgaactatgaagccaatagatatccttccactttttatgttaaa
aacgggaactatatcaagctgagaaccgcacaattgtcttatagcattccaaaattggta
ttgaaacagattggtgtttcttctttgacgctgactgcacaagggcaaaacctgttcacg
atcagcaacaacaggaggttcgaccctgagtcgtccggcacctttgccaactcttaccct
ccacaacggattttctcttttggtcttcgtttaggcctttaa
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