Pedobacter sp. PACM 27299: AQ505_21600
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Entry
AQ505_21600 CDS
T04140
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AQ505_21600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_21600
Enzymes [BR:
pep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AQ505_21600
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AQ505_21600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALL07859
UniProt:
A0A0P0NL85
LinkDB
All DBs
Position
complement(5133321..5136071)
Genome browser
AA seq
916 aa
AA seq
DB search
MSLTEYEKKRSFADTPEPQGGKGTGKSLRFVIQKHDASHLHYDFRLEMDGVLKSWAVPKG
PAMDPEIKRLAMMVEDHPYDYRNFEGIIPKGQYGGGTVIVWDEGTYVPFEPETDDLKKQE
KQLLHQLHSGKLKFILSGEKLKGAFALIKAYGKGENTWLLMKLEDKYAQTEDILLKDKSV
ISRKSIAQMEKQPDRVYGKAKPPKAKPSDPKPEKISKALNKEAKTILSAGKKLLSLVKKG
TKAPFFDHVQPMLATLVDEAFDEPGWLYEIKWDGYRALAFMQDSKIELKSRNDKPYNERF
YPIYEALKEWGVNAVLDGEVLVLNEKGTANFGALQNWHNETDGALRYYVFDILWYDGYDL
RGLPLVDRKAILAEIIPASSLILLSKDFETSGIDFLEAAKRAGLEGIMAKRMDSKYHTGN
RTQDWLKIKANHRQEVVIGGYTRNEDSPKPFSSLLVGVFEKGKLNYIGKIGTGFSVKTQQ
EMLAQFEPLVIDKSPFATKPDVNKTSPFRYDPLNATATWLKPKLICEVSFAELTADGLMR
HPSFEGMRSDKDPKAVLLEAAAHPDTLIYKNIMEAAKKNISKKKSKEKDKNSILDTPKAE
GANILLAAEEETQVKKINGHSVKFSNLSKIYWPVEKITKRDMINYYHEMATFILPYLLDR
PQSLNRYPNGITGGSFYQKDVTGKVPEWIKTYLYHAEGDDTDKHFLVGNDEATLLYMASL
GCIELHPWSSTIKKPDHPTWCIIDLDPGKNSFEQVIEAAQVTKAVLDGMGVPSYCKTSGS
TGLHIYIPMANRYTYEQSKEFARVIVTLVNRELPKFTSLERVVANRRGKMYLDFLQNRPQ
ATIAAPYSLRPKPGATVSMPLHWEEVKKGLQMKDFTIFNAVARANEMGDIFRPVLGKGID
LMAVIKNNKSEDLLLE
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttactgaatacgaaaagaaacgttcatttgcagatactcctgaacctcaggga
gggaaaggaactgggaaaagtctgcgttttgtgatccagaagcatgatgcttcccacctt
cattatgattttcgcttagaaatggatggtgtgctgaaaagctgggccgttccaaaaggc
ccggctatggatccggaaatcaagcgtttggcgatgatggtggaagatcatccttatgat
taccggaatttcgaaggcattattcctaaaggacagtatggcggcggaacggtgatcgta
tgggatgagggaacatatgtgccttttgagccggaaaccgatgatctaaaaaaacaggaa
aagcagctgctccatcaattgcatagcggtaaactcaaatttattctcagcggggaaaag
ctgaaaggggcttttgcattgataaaagcttatggtaagggtgaaaatacctggctgctg
atgaagttggaggataaatatgcgcagacggaagatatactgttaaaagataaatcggtg
atttccaggaaaagcattgcacaaatggaaaagcagccggatcgggtatacggaaaagcg
aaacctccgaaagctaagccctcggatcctaaacctgaaaaaataagtaaagccttaaat
aaggaagccaaaaccatcctgtctgctggaaaaaaactgctaagcttagtaaaaaaggga
accaaagcccctttctttgatcatgtgcagcccatgctggctaccctggtggatgaagca
tttgacgagccaggctggctttatgagatcaaatgggatggttatcgtgccctcgctttc
atgcaggattccaaaattgagcttaaatcccgcaatgataaaccttataacgagcggttt
taccccatatatgaggccttgaaagaatggggagtaaatgcagtgctggatggcgaggtc
ctggtgctgaatgaaaaaggtacggctaattttggggccttgcaaaattggcacaatgaa
acagatggagctctgaggtattacgttttcgatatcttatggtatgatggttatgattta
agagggcttccgctggtggatcgaaaagcaattcttgcagaaattattcccgcttcatcg
ctaattttattgagtaaagattttgaaacttcgggcatcgatttcctggaggctgcgaaa
cgcgccggtctggagggcattatggcgaaacgcatggacagcaagtaccatactggaaat
cgtacgcaggattggctaaagattaaagccaatcatcgacaggaagtcgtaattggcggt
tacactagaaatgaagacagtccgaaacccttcagttctttacttgttggggtatttgaa
aagggaaaattgaactatatcgggaagattggaactggtttcagtgtaaaaacacagcag
gagatgctggcgcagttcgagcccctggtaatagataagagcccctttgcgaccaaacca
gatgtcaataaaaccagtcctttccgatacgatccattgaatgcaacagctacctggttg
aagcctaaactgatttgtgaagtcagctttgctgaactcacagcagatggactgatgagg
cacccttcttttgaaggaatgcgatccgacaaagatccgaaagcggtattactggaagcg
gcagcacatccggacaccctgatttataaaaatataatggaagcagctaagaaaaatata
agcaaaaagaaaagtaaagaaaaagataaaaattccattctggatacccctaaagctgag
ggcgcaaacattttactggctgctgaagaagagacgcaggtaaaaaaaataaacggacac
agtgtaaagttcagtaacctcagcaaaatatattggccagtggaaaagatcaccaagcgg
gatatgatcaattattaccatgaaatggccactttcatattgccttatctgctggatcgg
ccgcaatctttaaatcgttatccaaatgggattacaggaggaagtttttaccagaaggat
gtgacaggaaaagttccggaatggataaaaacctatttgtaccatgcggaaggggatgat
accgacaaacattttttagtgggcaatgatgaggcgacattattgtatatggctagttta
ggttgtattgagctgcatccctggagcagtacgataaaaaagcctgaccatccaacctgg
tgcatcatcgatcttgaccctgggaaaaattcttttgagcaggtaattgaggcagcgcaa
gttactaaagctgttttagacgggatgggagtgccctcatactgtaaaaccagtggatct
acagggctgcacatatacatccccatggccaataggtacacctatgaacagagtaaagaa
tttgccagagttatcgttacactcgttaaccgcgagttgccaaaattcaccagtctggaa
cgggtagttgccaatcggaggggtaaaatgtaccttgacttcttgcaaaacaggccacag
gctaccattgcagcaccttattcccttcgtccgaaacctggggcaaccgtttccatgccc
ttacattgggaggaagtaaaaaaaggcctgcagatgaaagattttaccattttcaatgcg
gtagccagagcaaatgaaatgggcgatatttttaggccggtactgggaaaaggaatcgac
ctaatggcggttattaaaaacaataaaagcgaagacctgttattggagtaa
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