Candidatus Sodalis pierantonius: SOPEG_3586
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Entry
SOPEG_3586 CDS
T03006
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pes
Candidatus Sodalis pierantonius
Pathway
pes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOPEG_3586 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pes03021
]
SOPEG_3586 (rpoC)
03400 DNA repair and recombination proteins [BR:
pes03400
]
SOPEG_3586 (rpoC)
Enzymes [BR:
pes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOPEG_3586 (rpoC)
Transcription machinery [BR:
pes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOPEG_3586 (rpoC)
DNA repair and recombination proteins [BR:
pes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOPEG_3586 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AHF74818
UniProt:
W0HRN0
LinkDB
All DBs
Position
complement(3889502..3893722)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELEETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILI
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVLTGPKEAERIYRAG
VAELHARVKVRITEHEKRDNGEWVENTRLVDTTVGRAILWMIVPKGLPFSLVNQVLGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKAEIIDEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSTEAVINRDGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCDTFAGIVMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTTDILVERHTLLNEQWCDVLEENSVDSVKVRSVVTCDTDFGVCANCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIRL
SNAKFVVNGSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEIMGGETVANW
DPHTMPVITEVDGFVRFTDMIDGQTITRQTDELTGLSSIVVLDTAERTGGGKDLRPALSI
VGANGNDVLLPGTDMPAQYFLPGKTIVQLEDGAKITGGDTLARLPQETSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPVDGSDVYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIASSGSSEFLEGEQAEYSRIKIANRQLENDGKVEMTYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERARHRQQGEAPA
APQITADEASANLAELLNAGLGGNDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcctggtctttcggtgaagtgaagaag
ccggaaaccattaactaccgtaccttcaaaccggagcgcgacggtttgttctgcgcgcgt
attttcgggccggtaaaagactatgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggcgtcatctgtgagaagtgtggcgttgaagtgacccagaccaaggtgcgtcgtgag
cgcatgggccatattgagctggcttcgcctactgcccacatctggtttttgaaatcgctg
ccgtcccgtatcggcctgctgctggacatgccgctgcgcgatatcgagcgcgtgctgtat
tttgaatcctatgtcgtggttgaaggtggcatgaccaaccttgagcgccgtcagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaatttgacgccaaaatg
ggcgccgaagcgatccaggccctgctgaaaaatatggatctggagcaggaatgcgagcag
ctgcgcgaagagctggaagaaaccaactctgaaaccaagcgcaaaaagctgaccaagcgc
atcaagctgctggaagccttcgtgcagtccggcaacaaaccggaatggatgatcctgatc
gtgctgccggtgctgccgccggatctgcgtccgctggttccgctggacggcggccgcttt
gcaacgtcggatctgaacgatctgtatcgccgggtgatcaaccgtaataaccgcttgaag
cgcctgctggatctggctgcaccggatatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtcgatgcgctgctggataacggccgtcgcggccgcgccattaccggctccaac
aagcgtccgctgaaatcgctggccgacatgatcaaaggcaagcaaggtcgcttccgccag
aacctgctgggtaaacgcgtcgactactccggccgttcggttattaccgtcggcccgtac
ctgcgtctgcatcagtgcggtctgccgaaaaaaatggcgctggagctgtttaagccgttc
atttacggcaagctggaactgcgcggcctcgccacgacgatcaaagccgccaagaaaatg
gtggagcgcgaagaagccgtggtctgggatatcctggacgaggttatccgcgaacacccg
gtcatgctgaaccgtgcgccgacgctgcaccgtctgggcatccaggcgtttgagccggta
ctgattgaaggtaaagccattcagctgcacccgctggtgtgtgcggcgtacaacgccgac
ttcgacggcgaccagatggcggtacacgtgccgctgacgctggaagcccagttggaagcg
cgcgcgctgatgatgtctaccaacaacatcctgtcgcccgctaacggcgagccgattatc
gtaccgtcgcaggacgtggtgctgggtctgtactacatgacccgcgatcgcgtcaacggc
aaaggcgaaggcatggtgctgaccgggccgaaagaagcggaacgcatctaccgcgccggc
gtggccgagctgcatgcgcgcgttaaagtgcgtatcaccgagcatgagaaacgcgacaac
ggcgagtgggtggagaacacccgtctggtggacaccaccgtcggccgcgctatcctgtgg
atgatcgtgccgaaagggctgccgttctcgctggtgaaccaggtgctgggtaaaaaagcc
atctccaagatgcttaatacctgctatcgcgtgctgggtctgaagccgaccgtcattttt
gccgaccagatcatgtacaccggtttcgcctacgctgcccgttccggctcgtcggtcggt
atcgacgacatggtgatcccggcgaagaaagccgaaatcatcgatgaagccgaagccgaa
gtcgccgagatccaagagcagttccagtcgggtctggtgaccgccggcgaacgctataac
aaggttatcgatatctgggccgcggccaacgagcgtgtcgccaaggcgatgatggacaat
ctgtccaccgaagcggtgattaaccgcgacggcgaggaagaacgtcaggtgtcgtttaac
agcatctttatgatggccgactccggcgcccgtggttcggcggcgcagattcgtcagctg
gccggtatgcgtggtctgatggccaagcccgacggctcgatcatcgagacgccgattacc
gcgaacttccgtgaaggtttgaacgtactccagtacttcatctccacccacggtgcgcgt
aaaggtttggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgcttg
gtcgacgtggcgcaggatctggtggtgaccgaggacgactgcgacaccttcgccggtatc
gtgatgacgccggtaatcgaaggcggcgacgtgaaagagcccctgcgcgagcgcgtactg
ggccgcgtcacggcggaagatgtcctgaagccgggcaccacggatattctggttgagcgt
cataccctgttgaacgagcagtggtgtgacgtgctggaagaaaactccgtggacagcgtc
aaggtgcgttcggtcgtgacctgcgacaccgatttcggcgtgtgcgccaactgctacggc
cgcgatttggcgcgtgggcatctggtgaacaagggcgaagccatcggcgttatcgccgca
cagtccatcggcgaacccggtacccagctgaccatgcgtacgttccatatcggcggggcc
gcgtcccgtgccgctgcggaatccagcattcaggtgaaaaacaaagggaccatccgtctc
agcaacgccaagttcgtggttaacggcagcggcaagctggtaattacttcgcgtaatacc
gagctgaagctgattgacgaattcggccgtaccaaagaaagctacaaagtgccttatggc
gccgtgatggccaaaggcgacggcgcggaaatcatgggcggcgaaaccgttgccaactgg
gatccgcataccatgccggttatcaccgaagtcgacggtttcgtccgcttcaccgatatg
atcgacggccagaccattacccgccagaccgacgaactgaccggtttgtcctctatcgtg
gtattggataccgccgagcgtaccggcggcggtaaagatctgcgtccggcgctgagcatt
gtgggtgccaacggtaatgatgtactgctgccgggtaccgacatgccggcgcagtacttc
ctgccgggcaaaacgatcgtgcagttggaagacggcgccaaaatcaccggcggtgatacg
ctggcgcgtctgccgcaggaaaccagcgggaccaaggatattaccggtggtctgccgcgc
gttgccgatctgtttgaagcccgtcgtccgaaagaaccggcgatcctggccgagatcagc
ggtatcgtttccttcggtaaagaaaccaaaggcaaacgccgcctggttatctcgccggtg
gacggcagcgacgtttacgaagagatgatcccgaaatggcgtcagctcaacgtctttgaa
ggtgaacgcgtggagcgcggcgatgtgatttccgacggtccggaatcgccgcacgacatt
ctgcgtctgcgtggcgtgcatgcggtgacccgctatatcgtcaacgaagtccaggacgtc
taccgtctgcagggcgtgaagatcaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaagcgacgatcgccagcagcggcagctctgagttcctggaaggggagcaggcg
gaatactcgcgcatcaagatcgccaaccgtcagttggaaaacgacggcaaggtggaaatg
acctacatgcgcgatctgctgggtatcaccaaagcctcgctggccacggagtcgtttatc
tccgcggcgtcgttccaggaaaccacgcgcgtgctgaccgaagccgccgttgccgggaaa
cgcgatgaactgcgcggcctgaaggaaaacgtcatcgtcggacggttaatcccggccggt
accggttatgcttatcatcaggaacgcgcccgccatcgtcagcagggtgaagcgcctgcc
gcaccgcagattaccgccgatgaagcttctgccaatctggctgagctgctgaacgcgggt
ctgggcggcaacgacgactga
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integrated database retrieval system
