Petrimonas sp. IBARAKI: PEIBARAKI_4238
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Entry
PEIBARAKI_4238 CDS
T05132
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pet
Petrimonas sp. IBARAKI
Pathway
pet03030
DNA replication
pet03430
Mismatch repair
pet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PEIBARAKI_4238
03430 Mismatch repair
PEIBARAKI_4238
03440 Homologous recombination
PEIBARAKI_4238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pet03032
]
PEIBARAKI_4238
03400 DNA repair and recombination proteins [BR:
pet03400
]
PEIBARAKI_4238
Enzymes [BR:
pet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PEIBARAKI_4238
DNA replication proteins [BR:
pet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PEIBARAKI_4238
DNA repair and recombination proteins [BR:
pet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PEIBARAKI_4238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BBD44245
UniProt:
A0A3G9EDV4
LinkDB
All DBs
Position
complement(315276..319001)
Genome browser
AA seq
1241 aa
AA seq
DB search
MQPFVHLHVHSQYSLLDGQASINRIVDKAMNDGMAGIALTDHGAMYGIKEFVNYINSVKS
KTKNEIKQLSKELESNPASQKLKEEIAAKTAKLNFKPIIGCECYCARRNRFSQTEKIDGS
GWHLVVLAKNLTGYKNLIKMVSKSWTEGFYYRPRIDKELLEQYHEGLIVSTACLGGEIPR
KIDDGNVDGAEEAVEWFKNIFGDDFYLEIQRHKTDRPDADQTTFPKQQRVNEEIIKIGKK
YGVKVIATNDAHFVNEEDAEAHDRLICLSMGKDFDDPDRMRYTKQEWIKTTAEMNRIFSD
VPEALANTMEIADKVEIYSIDNPALMPFYPIDSSFGTEEEYKTRYPEAALIEKFGETNFK
RLGGYDKAIRIQLESDYLRHLTKIGARKKYGEELSEEVTSRLKFEIDTITNMGFPGYFLI
VQDFINAARQMDVAVGPGRGSAAGSAVAYCLGITDIDPLKYDLLFERFLNPDRISMPDID
IDFDDEGRDKVLQWVTEKYGFEKVARIITYGTMATKSSIRDVARVHKLPLAEADRLAKLV
PDRIPNVKKINLREAIEHVPELKEAANNPDPLVRDTLKYAEMLEGNVRSTGVHACGVIIG
QTDISDIVPISTADDKETKEKLLVTQYEGSVIEETGLIKMDFLGLKTLTIIKDALINIET
THGIKIDINTIPLDDPKTYELYSNGQTTGTFQFESTGMQKYLKELHPSKFEDLIAMNALY
RPGPMDYIPSFIARKQGKEKIVYDIPVMEKFLDETYGITVYQEQVMLLSRLLANFTRGQS
DELRKAMGKKLADKMAALKEKFISGGKSNGYKEKDLQKIWTDWEKFAQYAFNKSHSTCYS
WVAYQTAWLKANYPSEYMASVLSNNLNNITEITKFMDECKAMGINVLSPDINESVLKFSV
NKSGHIRFGLAAIKSVGHGAVEGILEERTNNGPFKDVFDFVERVNLSSCNKKNIESLALA
GAFDSLPGVKREHFLSVNSKGEDFLETLIRYGNKFQQDKYLSMNSLFGDDTSFMISRPEL
PKVEKLSDLVRLNKERELIGIYLSAHPLDDYEFILNYVCTSSCALLQDLNPLNGKDVSFG
GLVTTVREGQTKRGSPYTIMAIEDYTGSCELAFFGDDSVNFGRFARLGLSIYVTAKIQPK
RFRQEELEIKVSSINLLSEVKDKLVTKITLQLPITELDDTLVSELSALMKNNSGHSLLYF
NIIGEAYNMNVQLFSRPSKIQVNKHLIDNLKNNLNIDFKIN
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcagccatttgtacatttacacgtccactcccaatattccttgctcgacggacaagcc
agtatcaaccggattgttgataaagccatgaacgacgggatggccggaatcgcactgact
gaccacggagcgatgtacgggatcaaggagttcgtgaattatatcaacagtgtcaaatcg
aaaacaaaaaacgaaataaaacaattgagcaaggaactggaaagcaatcctgccagccaa
aaactaaaagaggagattgctgccaaaaccgccaaactcaatttcaagcccattattggc
tgcgaatgttactgtgcgcgccgcaaccgtttttcacaaacggaaaaaattgacggcagt
ggctggcatcttgttgtgcttgccaaaaacctgaccggatacaaaaacctcatcaagatg
gtatcgaaaagctggaccgaagggttttattaccgtccgcgcatcgacaaggaactgctt
gagcaatatcacgaaggactcatcgtctccacggcttgcctggggggtgagataccgcgg
aaaatagacgatggcaacgtggacggagcagaagaagcggttgaatggtttaaaaacatt
ttcggcgacgatttttacctcgaaattcaacgccacaaaaccgaccgccccgatgccgac
caaacgacttttccgaaacagcaacgtgtcaacgaagagattatcaaaatcggcaagaaa
tacggtgtgaaggtgattgctaccaacgacgctcacttcgtaaacgaagaggatgccgaa
gcgcacgaccggcttatctgcctgagcatggggaaggatttcgatgaccccgaccggatg
cgctataccaaacaggagtggataaaaaccacggctgagatgaatcgaatttttagtgat
gtgcctgaagcgctcgccaacacgatggagattgccgacaaggtagaaatttattccatt
gataatccggcattgatgcctttttaccccatcgacagttcatttggaacagaagaagag
tataaaaccaggtacccggaagcagcattgatcgaaaagtttggtgaaaccaattttaag
cggttgggaggatacgacaaagcaatccgtatccagctcgagtcggactatcttaggcac
cttaccaaaatcggggcacgcaaaaaatacggggaagaactcagcgaagaggttacctca
cggttgaagtttgaaatcgataccattaccaacatgggatttcccgggtatttcctgatc
gtccaggactttattaacgcggcacgccaaatggacgttgcggttggtccgggccgtgga
tcggcagccggatcggctgtggcatactgcctgggaatcacggatatcgatccgctgaaa
tacgatctgctgttcgagcggttcctcaacccggaccgtatctccatgcctgatatagac
attgatttcgacgacgaaggccgcgacaaagtactccaatgggttactgaaaaatacgga
ttcgaaaaggtcgcccgcatcatcacctacgggactatggctacaaaatcgtctatccgt
gatgtggcccgcgtgcataaactgcctctggcagaagcagaccggctggcaaaactggtt
cccgacaggattcccaacgtaaaaaaaataaatcttcgggaagccattgaacacgttccg
gaacttaaagaagccgccaacaaccccgacccgctggtccgggatacgctcaaatatgct
gagatgctcgaggggaacgttcgcagtaccggagtacacgcctgtggcgttattatcgga
caaaccgatatatccgacattgtccctataagcactgctgacgacaaggaaacaaaggaa
aagctgcttgtgacgcaatacgaaggctccgtcatcgaagagacggggttgataaagatg
gactttctgggacttaaaaccttgaccatcataaaggatgcgctcataaacatcgaaaca
acacacggcatcaagatagacatcaacaccattccgctggatgatccaaaaacatacgaa
ctgtacagtaacggccaaaccaccggtacattccagtttgagtcaaccgggatgcagaag
tacctgaaagagcttcaccccagcaagtttgaagacctgattgcaatgaatgccctgtac
cgtcccggcccgatggattatatcccttcttttatcgcccgcaagcaaggaaaagagaag
atcgtatacgatattccggtaatggagaaatttctggacgagacctatggaatcacggtt
taccaggagcaggtgatgcttttgtcgcgactgctggccaatttcacccggggacaatcg
gatgagttgcgcaaggccatgggcaagaaattggcggacaaaatggcggccttgaaagaa
aaatttatttccggagggaaatccaacggctacaaagaaaaagacctgcaaaagatttgg
acggactgggaaaaatttgctcaatacgccttcaataaatcgcattccacctgttattcg
tgggttgcctaccagaccgcctggctgaaagcaaactacccatcggaatatatggcgtcg
gtgttgtctaacaacctgaataacatcactgaaatcaccaagtttatggacgagtgcaaa
gccatgggcatcaatgttctttcgccggacatcaacgaatcggtactcaagttctcggtg
aacaaatccggccatatccgcttcgggctggctgccataaaaagtgtcggccacggagcc
gtggaaggcatactggaagaaaggacgaacaatggcccgtttaaagatgtgtttgatttt
gtggagcgggtgaatctatcttcgtgtaacaagaaaaacattgaatcactggcattggct
ggagctttcgattcgcttcccggagtaaaacgggaacattttctatcggtaaacagcaaa
ggggaggactttttggaaacgcttatccggtacgggaacaagtttcagcaggacaagtat
ctatccatgaattcactttttggggacgatacatcgtttatgatcagccgccccgaactg
ccgaaagtggagaaattatccgacctggtacgattgaataaagaacgggaacttatcgga
atttatctgtcggcacatccgctggatgattatgaattcatattgaactatgtttgcact
tccagttgcgcattgctacaggacctgaatccccttaacggcaaggatgtcagctttggc
ggcctggttaccaccgtaagggagggacagacaaaacgcggcagcccctacacgatcatg
gctatagaagattatactggcagctgtgagctggcgtttttcggagatgacagtgtaaat
ttcgggaggtttgcgcgcctcggactttctatttatgtcacggccaaaatccaacccaag
cgattccgccaggaagagctggaaataaaggtaagctccatcaacctgctttcggaggtg
aaagacaaactggttaccaaaataacacttcagctcccgattaccgaactggacgacacg
ttggtttcggaattatcggctctgatgaaaaacaattcgggccattcgttgttatatttc
aacattatcggcgaagcgtacaacatgaatgtacaacttttttcgcgtccgtctaaaatt
caggtaaacaaacacctgatagacaacttaaagaacaatttgaacatcgacttcaaaatt
aattaa
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integrated database retrieval system
