Populus euphratica (Euphrates poplar): 105120936
Help
Entry
105120936 CDS
T05872
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105120936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
peu03400
]
105120936
Enzymes [BR:
peu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105120936
DNA repair and recombination proteins [BR:
peu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105120936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
105120936
NCBI-ProteinID:
XP_011017670
LinkDB
All DBs
Position
Unknown
AA seq
1319 aa
AA seq
DB search
MASSSSSSSTEHTKFSILVSLFNWISKAKTSSRKRSKFRKFIDTFCSPSDYFSAVRLILP
NLDRERGTYGLKESVLAVSLIEALGMSRDSPDALKLINWRKGGANATGANAGNFSLVAAE
VLQRRQGTVSGGLTIEELNGLLDKLASSENRGEKTEVLAALINKTNTQEMKWIIMIILKD
LKLGMSEKSVFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMR
VSDAHAAWKKLHGKEVVLECKFDGDRIQIHKNGADVHYFSRNFLDHSEYAHGMSDIIVQN
VLDERCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSV
IHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLLGEPHCSLIAYNVDGIEKFFKET
IENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQ
FLLGLAERPASNAYPRRFISFCRVGNGLSDEELDTVVSKLKPYLRKNEYPKNSPPSFYQV
TNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECLD
VQSFVELVHSSNGTTQKGKGYGDVQDSKLRHIKSSRKGEKKSLSVVPSHLIQTDISDIKG
ETLIFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAESKGIKYQAAK
LHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDMK
QLLSNINASEDAKAIDDLKKKYFPGEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRL
KLEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGFLVKSFTTAEKHFLLNKRLYVIGSQW
LEDSLERGQKLPEDTYNLKPSGLEESNCKEVVCDLDMEEATPISDGAENERLPSVTDSEA
KEKGSKAALKDSNKLGSLEKETTRKRGRPAGGSIKKGKVGAGQARRTRARIVNKPAKISV
EKSDDSCSHDDKNEENDMSDGNEEIHIGKPAGGITKKRKMGAGLARRTRACIVNKPAKIS
EEKPDESCCHDDKNEENEMSEGNYEIHGGRPAGGSTKKGKIGAGQARRTRTRIANKPAKI
LEERSEESCLHDDEIEENEMNEENEEIHGPVSKYNLDIQQTKKVEDSESSRRGKAKEETA
EENRDEEWLDKAPGVEMRERYYNQVTEKPEKLEVMVDPVHAILMDMIPSLGMKKGETTNP
TIDNEKQAEGPYAQSSLSMKKVENTTPTLDTEKPAENPSLLPVKKKVSYKDLAAKLLMN
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcttcctcttcgtcgtcaactgagcacacgaaattctccatcttagtgagt
ctcttcaactggatttcaaaggccaaaacttcctccagaaaacgctctaaattccgcaaa
ttcatcgacactttctgctctccgtccgattacttctccgccgtccgcttgatcctccct
aacctcgaccgcgaacgcggcacttacggtctcaaagaatctgtcctcgccgtttccctc
attgaagcactcggcatgtccagggattcccctgatgccttgaagttgattaattggcgt
aaaggtggcgccaacgctaccggtgctaatgccggcaatttctctctcgttgctgccgaa
gtgttgcagcggaggcagggaacggtgtcgggtgggttgacgattgaggagctgaatggt
ttgcttgataaattggcatctagtgaaaataggggtgagaaaactgaagtacttgctgct
ttgataaacaagacaaatacacaggaaatgaagtggattattatgattattcttaaagat
ttgaagttggggatgagtgaaaagagtgtatttcatgaatttcacccggatgcggaagac
ttgtttaatgttacatgtgacttaaaattggtttgtgaaaagctgagggatcgaaatcaa
aggcataaacgtcaggatattgaagttggaaaagcagtgcgccctcaactagcaatgaga
gttagtgatgcacatgctgcatggaaaaagttgcatgggaaggaagtggtgttggaatgt
aaatttgatggtgatcgcatccaaatacataagaatggtgcggatgtacactatttctca
aggaactttctagatcactctgaatatgctcatggaatgtcggacattattgtacaaaat
gttttggatgagaggtgtattcttgatggtgaaatgctggtctgggatacatctttgaat
cggtttgcagagtttggttcaaatcaagaaatagcaaaggctgcaagggatgggcttgat
agtgatagacagttatgctatgttgcatttgatattctttatgttggagatacaagtgtg
attcaccaaaccttgaaggaaaggcatgagctgctccgtaaagttgtcaagccagtgaag
ggtcgtttagagatcttagtacctaatgggggtcttaatgctcatcgtcttcttggggaa
cctcattgttcgcttattgcatataacgtggatggcattgagaaattttttaaggaaacc
attgaaaacagggatgaaggtattgtattaaaagaccttggttccaaatgggaaccaagt
gatcggagtggaaagtggttgaaactgaagcctgagtacattcgtgctggttctgactta
gatgttcttatcataggggggtactatggttctggacgtcgtggaggagaggtggctcaa
ttcttgttgggtctagcagagcgtcctgcttctaatgcatatcccaggcgatttatctcc
ttttgcagagtgggcaatgggctgtcagatgaggagctggatactgttgtctccaaacta
aagccttatttgaggaagaatgaatacccaaagaactcaccaccaagtttttatcaagtt
acaaataattcaaaagagagaccagatgtgtggattgaaaaccctgacaaatcaattata
ctttccattaccagtgatattcggactataagttctgaggtcttttctgccccatacagc
ttgagatttccgcgtattgacagagtgagatatgacaagccttggcatgaatgtcttgat
gtgcagtcgtttgtagagctagtacattcaagtaatggtaccacacaaaaaggaaaaggt
tacggagatgtgcaagatagcaaactgagacacataaaatcctctaggaaaggagagaaa
aagagtctgtctgttgttccatctcatttaattcagactgatatttctgacatcaagggg
gaaactttgatattttcaaatatgatgttttactttgtcaatgtgcctccatctaattct
ctcgaatccttgcacaaaatggttgctgagaatgggggaactttctcaatgaatttaaat
aactcagtcacccattgtatagctgctgaaagcaaagggattaaatatcaagcagcaaag
cttcacggagatattattcattattcatgggtcttggattgctgtttgcaaaagaagctc
cttccattgcagccaaagtccttcctttttctctctgatggttcaaagaagaagttacac
gaagaaattgatgaattttctgattcttactactgggaccttgatctttcagacatgaaa
cagcttttgagcaacataaatgcatcagaagatgccaaagccatagacgacttaaagaaa
aagtactttccaggggaaaaatggtctctgtttcatggctgctgtgtatattttcacatt
tcaagagagtctttaacacccgattgggaatccttgttgggacttgcatttaggaggttg
aaacttgaaattttcatgggtggtggcaaagtcagcaataatattgctcatgccactcat
ttggtggtcctgattgtaccagcatctgatgtggattttggtttccttgtgaaaagtttc
acaactgcagagaaacattttctcctgaataagaggttgtatgtgattggatctcaatgg
ttggaggactctttggagagggggcaaaagttgccagaggatacatataacttgaaaccc
tctggtttggaagagtcaaactgcaaagaagttgtatgtgacctagatatggaagaagca
actcccatttcagatggtgcagaaaatgagagattgccatcagttactgatagtgaagcc
aaggagaaaggaagcaaagctgctttaaaagattcaaataaactgggctcactagaaaag
gagacaacaaggaaaagagggaggcctgctggtgggagcataaaaaaaggaaaagtaggc
gctggccaagctcgaagaacacgggcacgaatagtaaacaagcctgctaaaatatccgta
gaaaaatcagacgacagctgttctcatgatgataaaaatgaagaaaatgatatgagtgat
ggaaatgaagaaattcatatagggaagcctgctggtgggataacaaagaaacgaaaaatg
ggtgctggcctagctcgaagaacacgtgcatgcatcgtaaacaagcctgctaaaatatct
gaagaaaaaccagatgaaagctgctgtcatgatgataaaaatgaagaaaacgaaatgagt
gaaggaaattatgaaattcatggagggaggcctgctggtgggagcacaaagaagggaaag
ataggtgctggccaagctcgaagaacacggacacgtatagcaaacaagcctgctaaaata
cttgaagagagatcagaagaaagctgtttgcatgatgatgaaattgaagaaaacgaaatg
aatgaagaaaatgaagaaattcatgggccagttagcaagtacaatctggatatccaacaa
actaaaaaggtagaagattcagaatcatcacggagaggtaaggcaaaggaggagactgct
gaagagaacagagatgaagagtggttagataaagctcctggtgttgaaatgagagaaagg
tattataaccaggtgactgagaagcctgagaaactagaagtcatggtcgatccagttcat
gccatcttaatggacatgattccaagccttggtatgaagaagggggagaccacaaatcca
acaattgacaatgaaaaacaagctgaaggtccctatgcacagtcaagcctcagtatgaag
aaggtggaaaatacaactccaaccctagataccgaaaagccagctgaaaatccaagttta
ctgccagtgaagaagaaagtcagctacaaagatcttgctgccaaactgctcatgaattag
DBGET
integrated database retrieval system
