Populus euphratica (Euphrates poplar): 105128409
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Entry
105128409 CDS
T05872
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03013
Nucleocytoplasmic transport
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105128409
03015 mRNA surveillance pathway
105128409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105128409
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105128409
mRNA cycle factors
P-body specific factors
105128409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
105128409
NCBI-ProteinID:
XP_011028362
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MKGGGQSDKTKVVVRHLPPGISKPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYI
DFKRPEDVIDFAEFFNGHLFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTILKDPEY
LEFHELIEKPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRILS
NGKLSRRAGGSGSPSSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVQVPKRDGQQ
LSNAVTLGSGSGTAVLEDESGVSGITDSGKKKILLLKGKEKEISLVTGTMAQQQSISSSD
RNIISSTVLKSQRRETSGRMIRSILLNKDSRHIRSSGVHSEPQMQTSNLEKDKRPPRPPH
AQLGLKDANGTPDDKVVGNDLHGFPNEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESL
SSSASQSTQSVFDSSQGNHGDVKVDNLNLRSGEVKVLGSGRSNHSSLDNGSHKHFGRRGP
SHIVRDAEGSAVEAKTPKRGGASGYGSHEKQVWVQKSTSGS
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtggtggtcagtctgacaagaccaaagtggtggtccgccacttgccgccgggg
atttctaagccgatgtttgtcgagcaaatcgatgttgctttctctggccgctacaattgg
ctctcctatcgtcctggcaacaacagccagaagcatcaatcctattctagagcctatatt
gatttcaaaaggcctgaggatgttattgactttgctgagttctttaacggccacttattt
gttaatgagaaaggcactcagtttaaagctattgttgagtattctccttcacagcgtgtc
ccaaaacagtggtctaagaaggatggtcgtgaaggcaccatattgaaagatcctgagtat
ttggagtttcatgaattaattgaaaagcctgttgagaatcttccgagtgctgaaatacaa
ctcgaaagaagagaagcagaaagagctggtgctgcaaaagatgctcccattgtcacacct
ttaatggactttgttcgacagaaaagagttgctaagaatggacctcggaggatattgtcc
aatgggaaactgagcagaagggctggtggcagtggaagtcctagttcatcctcattgaaa
cgaggttctgagaagaagagaatttcaacaacaatgtacgttttaagggacactgcaaaa
agtacaagtggaaaagacaaatcaacttatgtgcaggttcccaagcgagatggtcagcaa
ctttctaatgctgtaactttgggttctgggtctgggactgcagtattagaagatgaaagc
ggggtttctggaattactgattctgggaagaagaaaatcctgcttctgaaagggaaagag
aaggaaatctcactggttactggcaccatggctcagcaacagagcatatcatcttcagat
agaaatataattagttcgactgttctaaagagccagcggcgtgaaaccagtggaaggatg
atcagaagcatactcttaaacaaggattcacgtcatattcgatcctctggagtccattct
gagccacagatgcaaacctcgaatctagagaaggacaaacgtcctcctcggcctccacat
gcacagttgggtttgaaggatgcaaatggaacaccagatgacaaggttgttgggaatgat
ctgcatggttttccaaatgagaagcaggaaaagcgcaccagaaataaggataggcctgat
cgtggagtgtggactcctctccgcagatcagatggatcctatgcaagtgatgaatccttg
tcatcatctgcaagtcaatccacacagtcagtgtttgattcttcacaaggaaaccatggt
gatgtaaaagttgacaacttgaatttaaggagtggagaagtaaaagttcttggaagtggg
cgtagtaatcattcttctttagataatggatcacataaacattttggtcgtcggggacca
tcacatattgtgagggatgctgaaggctctgctgttgaggcaaaaactcctaaaagaggt
ggtgcttctggttatgggtcccatgagaagcaagtctgggttcaaaagtctacttctggt
tcttag
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