Populus euphratica (Euphrates poplar): 105130645
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Entry
105130645 CDS
T05872
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03013
Nucleocytoplasmic transport
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105130645
03015 mRNA surveillance pathway
105130645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peu03019
]
105130645
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105130645
mRNA cycle factors
P-body specific factors
105130645
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
105130645
NCBI-ProteinID:
XP_011031522
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MKKKKEPLGRTKVVIRHLPPSLSQSNLFSQFDHRFCHRYNWFRFRPGNSSHKSQRYSRAY
IDFKNPEDVLEFADFFHGHVFVNEKGSQFKAIVEYAPCQRVPKSCPHKDSREGTIYTDPD
YLEFLKLIAKPVRNPPSAEIKLERKEAEESEAVKGAPISTPLMEFVRKKRADKGGQGPAV
VKNRKRAGSASLTNSGSSNAKQDSGKKRYILKDGTKNSNWKGKSIIIMARKQEGLPTTSG
GKEISEVESISGVEGSVSKISLDAESGKKKKLLLDGKRREISLESEGPLHQLGLTSNFGS
SVSTAAKEYQRHEAGERLIKSILPSKAASAKKKFQNLEVENDKQPIQPKTTQVGLNGHVP
YKEPLASMSDNDVKRSSYDKLVKKDQHDPGSHFEKREKHTRNKDRPCRGVWTPVRNCPSK
HANAEHLTSSILQSEVHSDSVRATHGEVKDGTRFRDHNQGSAGSTNGSNNSSAENGSHRD
FGRQVTAHNIMLDSSPSATGGKFSKKGGHAGYTAQEKQVWVQKS
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaagaaggaacctctaggaagaaccaaagtagttataaggcatttgccacct
tctctttctcaatcaaatctcttctctcaattcgatcatcgtttctgccatcgctacaat
tggttccgcttccgccccggcaactccagccacaagagtcagaggtattctcgagcttat
attgacttcaagaatccggaagatgttttggagtttgcggacttctttcatggacatgta
tttgttaatgagaaaggttctcagttcaaggccatagttgagtatgctccttgtcaacgt
gttcctaagtcatgcccccataaagattctcgtgaagggactatttacacagatcctgat
tatctggagttcctcaaacttattgccaaacctgtgcggaatcctcctagtgctgaaatt
aagttagaaagaaaagaagcagaggaatctgaggctgtaaaaggagctcctatttctaca
cccttgatggaatttgttcgtaagaaacgagctgataagggtggtcagggtccagctgtt
gttaagaacaggaaaagagctggatcagcgtctcttaccaattctggttcaagtaatgcc
aaacaagactctggcaagaaaaggtatattctcaaggacggcaccaagaattcaaattgg
aagggcaagtcgattatcatcatggcacggaagcaggagggcctacctactacttcaggc
ggaaaagaaatatcagaagttgaatccatttctggagttgaaggttctgtttctaaaatt
tctttggatgctgagtctggaaagaaaaaaaaattgcttctggatggaaaaaggcgtgaa
atttctcttgaatctgaggggccgttgcatcagttgggcctcacttctaattttggaagt
tcagtttctactgctgctaaagagtatcagaggcatgaagctggtgagaggctgataaaa
agtattctaccttcaaaagctgcctcagccaagaagaaatttcaaaacctagaggtggag
aatgacaagcaaccaattcagcccaaaaccacgcaagtgggtttgaatggtcatgtccct
tacaaggagccactggcatctatgtctgacaatgatgtaaaaaggagttcatatgataag
cttgtgaaaaaggatcaacacgatcctggctctcattttgagaaacgagaaaaacataca
agaaataaggatagaccatgtcgtggtgtttggactcctgttcggaactgtcctagtaaa
catgctaatgctgaacacttaacatcctctatattgcaatctgaagtgcattctgattct
gttcgagcaactcatggagaagtaaaagatggcacgcgatttagggaccataatcaggga
tcagcagggtcaacaaatggaagcaataattcttctgcagagaatggttcccatagagat
tttggtcgtcaagtgacagcccataatataatgcttgatagctccccgagtgcaactgga
ggaaaattttccaaaaaaggaggtcatgctggctatactgcccaggagaaacaagtatgg
gttcaaaagtcttaa
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