KEGG   Populus euphratica (Euphrates poplar): 105131328
Entry
105131328         CDS       T05872                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
peu  Populus euphratica (Euphrates poplar)
Pathway
peu03030  DNA replication
peu03410  Base excision repair
peu03420  Nucleotide excision repair
peu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:peu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105131328
   03410 Base excision repair
    105131328
   03420 Nucleotide excision repair
    105131328
   03430 Mismatch repair
    105131328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:peu03032]
    105131328
   03400 DNA repair and recombination proteins [BR:peu03400]
    105131328
Enzymes [BR:peu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105131328
    6.5.1.6  DNA ligase (ATP or NAD+)
     105131328
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105131328
DNA replication proteins [BR:peu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    105131328
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     105131328
DNA repair and recombination proteins [BR:peu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105131328
   NER (nucleotide excision repair)
    Other NER factors
     105131328
   MMR (mismatch excision repair)
    Other MMR factors
     105131328
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Other DBs
NCBI-GeneID: 105131328
NCBI-ProteinID: XP_011032556
LinkDB
Position
Unknown
AA seq 490 aa
ESGKDSQDKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLAALGQAAVYTEEH
STPPPHIQSPLDEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFTPGVPVGPMLA
KPTKGVSEIVAKFQDMEFTCEYKYDGERAQIHYLENGSVEIYSRNSERNTGKFPDVVAVI
SRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNVCIYAFDMLYL
NDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDAAVDASCEGLIIK
TMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYNI
NNEEFQSICKIGTGFSEQVLEERSASLRTQVIPKPKSYYRFGDTIKPDVWFEPKEVWEVK
AADLTISPVHRAAIGEVDPDKGISLRFPRLVRVRDDKSPEQASSSEQVAEMYNAQKHNHQ
NNQDDNDYDD
NT seq 1473 nt   +upstreamnt  +downstreamnt
gaatctgggaaggatagtcaagacaagaaaaagaaccatatcaaggcacttcttgtggca
gccacagactgcgagcctcagtatctaattcgtctgcttcagacaaagttgagaattgga
ttggcagaacagactcttttggctgctctgggacaagctgctgtatatactgaagagcat
tctactcctcctccacacattcagtctcctttagatgaggctgcaaagattgttaaacaa
gtatactctgtgcttcctgtctatgataaaatagtccctgctcttcttagtgacggcgtg
tggaatcttcccaagacatgcagcttcacacctggtgttccagttggacctatgctggca
aaaccaaccaaaggggtttctgagatagtagctaaatttcaggatatggaattcacctgt
gaatacaagtatgatggagaacgtgcccagatacattacctggagaatggttcggttgag
atatatagtcgaaattctgagcgaaatactggaaaatttcctgatgttgttgctgtgatt
tcccgattaaagaggccctcggcaagctcatttattctggattgtgaactagttgcttat
gatagagaaaaaaagaaaattctcccctttcagatcctcagtacccgggcccgcaaaaat
gtggtgatgagtgatatcaaggttaatgtttgcatatatgccttcgacatgttgtatctt
aatgaccaaccacttattcagaaagaactgaaagttcgtagagagcatctttacagttca
ttcgaggaagaacctggattttttcagtttgcaactgcaataacatcaaatgatcttgaa
gagatacaaaaattcctcgatgctgctgttgatgccagttgtgagggtttaatcatcaaa
acaatgaataaggatgctacatatgaaccttcaaggcgatcacataactggctgaaattg
aagaaagattacatggaaagtattggagactcactagatctagtgcctattggtgctttc
catggtcgtggaaaacgtacaggtgtctatggtgcttttctccttgcttgttataatatc
aacaacgaagaattccagagcatatgtaaaataggcactggattttctgaacaagtgctt
gaggaacgttctgctagtctccgtacacaagtgattcccaaaccaaagtcatactataga
tttggagatactattaaaccagatgtgtggtttgaacccaaggaggtgtgggaggtgaaa
gcagcagacttgactattagccctgttcatcgtgctgcaattggtgaagttgatcctgac
aagggtatttcactaagatttccccgtcttgttcgagttcgagacgacaagtctccagag
caagcctcatcatcagagcaggttgctgagatgtataatgcccaaaagcataatcatcaa
aacaatcaagatgacaatgattatgatgattga

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