Populus euphratica (Euphrates poplar): 105134846
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Entry
105134846 CDS
T05872
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
peu
Populus euphratica (Euphrates poplar)
Pathway
peu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105134846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peu03021
]
105134846
03019 Messenger RNA biogenesis [BR:
peu03019
]
105134846
Transcription machinery [BR:
peu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105134846
Messenger RNA biogenesis [BR:
peu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105134846
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105134846
NCBI-ProteinID:
XP_011037702
LinkDB
All DBs
Position
Unknown
AA seq
1053 aa
AA seq
DB search
MQPTKLLNPKTATKAAAAAAVTTTMPNELLPQKPSASSVLDKFRSLLKQRQGSAVEDDGG
GDGASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV
DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP
SSVLHKIETQLDFSPQVNNQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADNTGWS
ILTSKAKNVIQSLQNVQHTKGTSNLKIYGKKPAVGYDEYESDQAEAISSQVGMGRTSLIL
GSNKLQPSSTSRLARRLLPLTTGAERPLSSEIDDLAVGNSPRRFVEGLSPSRPLFDYGHS
RTIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYGDDRGKRITSS
KPLHIEQLAVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTNDFLPSSIPPFGSVV
PRPAFGRLSAIHAESDIRSNRSSLAPMASVDGSSNIAEEAVSILGSGRGSTSKIPGFRTE
RNQILGSRHHQEAWNFPPHIHQSAHLLNSKGRGRDFQMPLSGSGVSSLGGENYSPLAEKL
PDIDAQLNRSPAIASRWGSNIDSTSSGTWSSVVPPSSGVWPPVNARKSLPPPVHRIFPPP
EQSRSQFDPINASSTVINQVLQKGSAMPEQPFNGFENKDYNSMKPTPMSNQHAALNQQNQ
AHVNPFQPQQLPSHETRENFHPSGVTSMPPRPLGQPLNHGYNTHGHSTAISMVPSNALPA
VQLPLPVNNIPNMLHSQVGLRPPLPPGPPPQTMPFSQNVSSSVPGQPSGSAFSGLFNSLM
AQGLISLTKQSPVQDSVGLEFNADLLKLRYESAISALYGDLPRQCTTCGLRFKCQEEHST
HMDWHVTKNRMSKNRKQKSSRNWFVSASMWLSGAEALGTDAAPGFLPTETTVEKKDDHGM
AVPADEEQSTCALCGEPFDDFYSDETEEWMYRGAVYLNSSNGSTAGMDRSQLGPIVHAKC
RSDSSVVPPEDFGHDEGLQVNSEEGNQRKRMRS
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccacaaaactcctaaaccctaaaaccgccaccaaggcggctgctgcggcagcg
gttaccaccaccatgccaaatgaactgctgccacagaaaccatcagcatcgtcagttctt
gacaagttccggtctttattgaagcaacgacaaggatcagcggtggaggacgatggtggt
ggtgacggggcgagtttgagtatggaggatgtggtggagatttatgagacggttttgaat
gaattgacgtttaattcaaaacctataattactgatttgactattattgctggagagcag
cgggagcatggtgagggcattgctgatgttctctgtgcccgcattgttgaggcccccgta
gatcaaaagctgccttcattatatcttctagatagcattgtcaagaatattggccgggaa
tacattaggcacttctcgtcccgtttgccggaggttttttgtgaggcatacagacaagtt
gaccctagcttatatccttcaatgcgccacctttttggcacatggtcctcagtgtttcct
tcttctgtacttcacaagattgagactcaacttgatttttctccacaagttaataatcag
tcatcaagcttgacttcctttagagcttcggaatcacccagaccacctcatggcatacat
gtgaacccaaaatacttgcgtcagctggatcattcaactgcagataatacaggttggtca
atactaacatccaaagctaaaaatgtaattcaatctttgcagaatgttcagcacactaag
ggaacttcgaatctgaaaatatatggtaaaaaacctgctgttggatatgatgaatatgaa
agtgatcaagcagaggccatatcttcacaggttggaatgggtcgtacatcactcattctt
ggatctaataagctgcaaccatcttcaacttccaggcttgcaagacgcttgttgccttta
acaactggagctgagaggcctttatcttcagaaattgatgacttggcagtagggaattct
cctcgaaggtttgttgaggggctatccccatctcgtcctctatttgattatggacacagc
agaaccattgttagagatgaggaggcaaatgaattaagaagaaataactactctgatgat
aaccataaccgatttgaaccttctgctagatataggcttagcaatggacttgaacatcaa
ggacccagagctttaatagatgcatatggggatgatagggggaaaagaattacaagtagt
aaacctcttcatattgaacagttagctgtaaatggcatgcacaataaggtagcttcaaga
tcatggcagaatactgaagaagaggaatttgattgggaagatatgagccctactttgtca
gagcatggtaggactaatgatttcttgccgtcgtctattccaccttttggaagtgttgtt
ccaaggcctgcctttggaaggctaagtgctatccatgcagaatctgatatcaggagcaat
cgatctagtctggctccaatggcatctgtggatggctcctctaatattgctgaagaagca
gtctcaattctgggttctggtcgtggatcaacaagcaagattcctggattccgaactgag
agaaatcagatcttgggttcccgtcatcatcaagaagcctggaattttccgcctcacatc
catcagtcagcacatctcctgaattctaaaggaagaggacgggatttccagatgccctta
tctggaagtggtgtgtcttctttgggtggtgagaattactctccacttgctgaaaaactt
ccagatattgatgcacagcttaataggtctcctgccattgcatcaagatggggctctaat
attgactctactagttcagggacctggtcaagtgttgtgccaccatcatcaggggtctgg
cctccagtaaatgcacgaaagtctctgccacctcctgtgcatcgaatttttcctccacca
gagcagagtagaagccagtttgatccaataaatgccagcagcactgtaataaatcaggtt
ttacagaagggttcagctatgcccgaacaaccatttaatggttttgagaacaaagattac
aattcgatgaagccaacaccaatgtctaatcagcatgctgctttgaatcagcaaaaccag
gcacatgtaaatccttttcagccacaacaacttccatctcatgaaacccgagagaatttt
catccatctggggtaacttcaatgccacctcgtcccctgggacaaccactgaatcatgga
tacaacactcacgggcatagcacagccattagtatggttccttcaaatgcattacctgct
gtacagctgcctttaccagtcaacaatattccaaatatgttgcattcacaggttgggctt
cggccacctttgccacctggtcctcctccccaaacgatgcctttctctcagaatgttagt
tcaagtgtccccggccaaccatctggcagtgcattttcgggtttgtttaactctctcatg
gcacaaggtttgatctcattgacaaaacaatctcctgtgcaggattctgtgggacttgag
ttcaatgctgaccttctcaagctgcgctatgaatctgcaatcagtgcattgtatggtgat
ctgccaagacaatgcacaacatgtggccttcggttcaagtgtcaagaagaacacagtact
cacatggattggcatgttactaaaaaccggatgtctaagaaccggaagcagaaatcttct
cgcaactggtttgtaagtgcaagtatgtggctcagtggtgcagaggcattgggaactgat
gcagctcctggttttttgcccactgagaccactgtggagaagaaggatgatcatggaatg
gctgttcctgctgatgaagagcagagtacatgtgcattatgtggagagccttttgatgac
ttctacagtgatgaaactgaggaatggatgtatagaggagctgtctacctgaattcatct
aacggatcaacagcaggcatggatagatctcagttaggtcctatagtacatgctaaatgc
agatccgattctagcgtggttccccctgaagattttggacatgatgaagggctgcaggta
aattctgaagagggtaatcaaagaaaacgaatgcggagttaa
DBGET
integrated database retrieval system
