Paraburkholderia edwinii: KZJ38_10265
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Entry
KZJ38_10265 CDS
T07588
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KZJ38_10265 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pew03400
]
KZJ38_10265 (ligD)
Enzymes [BR:
pew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KZJ38_10265 (ligD)
DNA repair and recombination proteins [BR:
pew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KZJ38_10265 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QYD70629
LinkDB
All DBs
Position
1:2307707..2310700
Genome browser
AA seq
997 aa
AA seq
DB search
MADKLETYHRKRRFDETPEPSGATARRKTGSRSAGAARKSTHALAFVIQEHDARRLHYDF
RLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLDYGSFEGTIPEGHYGAGDVIVWDRG
TWEPVGGEDEARAAYEAGKLKFQLHGDKLHGGWTLVRSHMRGSGDKEQWLLIKERDGEAH
GESEFDVLDAYPGSVLSDAPGARDTGAADGDGKAGRVAAKGAQGTRKRATTQGAHGPSDS
AANGSRTSRRKVAASLGATALAQPNTTRRASAAKRAGHPDIVATRNSESLRELAQTPAIE
GAKKASLPTAMKPELATLVDTPPAGDAWVYEIKFDGYRVLARIDRRQAKDPVRIFTRAGN
DWTEKFSKQAKAFANVGVDTAWLDGEAVVLDEHGVPSFQALQNAFDTHRERDITVYLFDV
PYLNGYDLREVPLEQRRALLRALLEPLDDDALRYSADFGTDADALLKSACEMSLEGIIGK
RRDSRYASGRSSAWIKLKCRRRQEFVIGGYTEPGGSRADFGALLLGVYDEDGKLRYAGRV
GTGFDAKRLRAVKKELDARETSKMPFASVPSERSRTPVHWVKPELVAECNFAELTDEGIV
RQASFISLRSDKPARQIVIEAPRKGADVQQTSDEETAASRSTPRTKTRAAASQGAAKDDG
TAATKRAGKASASRKAAHSESDNEPEAAPASRTSKAKGATQTVAGVRISHPDRVIDKHTD
TRKIELVRYYESVADWMLPHLRDRPVSLVRAPEDIGGELFFQKHAEKLSIPNITQHPGLD
PGHPSLITIDSAKALVGAAQMGTIELHTWNAVASNIEKPDRVVFDLDPDAALGWERMIEA
AQLTHTLLDELGLVSFCKTSGGKGLHIVVPLTKHEGWDEVKAFSQAVAQHMATTLPKNFA
AKMGAQNRKGKIFVDYLRNNRGSSTVAAYSARARPGLGVSVPLTWDEVPETTAGDQWNIA
NLHERLQSLREDPWAAYAKTRQRITAAMRKRLAGERG
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaactcgagacctatcaccgcaaacgacgcttcgatgaaacacccgaaccg
tccggtgcgaccgcgcggcgcaaaaccggcagccgcagcgcgggcgccgcgcgcaagtcg
acgcacgcgcttgccttcgtcattcaggagcacgatgcgcggcgtcttcactacgatttc
cggctcgaactcgacggcacgctgaaatcgtgggcggtgccgaaaggaccgagcctcgat
ccgtcggtgaagcgcctcgccgtgcacgttgaagaccatccgctcgactatgggtcgttc
gagggcacgattccggaaggccactatggcgcgggcgacgtgatcgtctgggaccgcggc
acgtgggagcccgtcggcggcgaggacgaggcgcgcgcggcctacgaagcgggcaagctc
aagttccagttgcacggcgacaagctgcatggcggctggacgctcgtgcgcagccatatg
cgcggcagcggcgacaaggagcagtggctgctcatcaaggagcgtgacggcgaagcgcat
ggcgaaagcgaattcgacgtgctcgatgcgtatccgggcagcgtgctgtccgatgcgccg
ggtgcgcgagatacaggtgctgcagatggcgatggcaaagccggtcgagtcgcggcaaaa
ggcgcgcagggcacacgcaagcgcgcgactacgcaaggcgcgcacggacccagcgacagc
gccgccaacggtagccggacctcgcgtcgcaaagtggccgcttcgctcggcgccaccgcg
ctcgcgcagccgaacacgacacgccgtgcgagcgccgcgaagcgcgccggccaccccgac
atcgtcgcgacgcgcaacagcgagtcgctgcgcgaactcgcccaaacacccgcgatcgaa
ggcgcgaaaaaggcctcgctgcccaccgcgatgaaaccggaactcgccacgctcgtggat
acgccgcctgccggcgatgcatgggtctatgagatcaagtttgacggctaccgagtgctc
gcccgcatcgatcgtcgccaggccaaggacccggtgcgcatcttcacgcgcgcgggcaac
gactggaccgaaaaattcagcaagcaggcgaaggcattcgcgaacgtcggcgtcgacacc
gcctggctcgacggcgaagccgtagtgctcgacgagcatggcgtaccgagctttcaggcg
ctgcaaaacgcattcgatacgcaccgcgaacgcgacatcaccgtgtacctgttcgatgtg
ccgtacctgaatggctacgacctgcgcgaggtgccgctcgaacaacgccgcgccttgctg
cgcgcgctgctcgaaccgctcgacgacgacgcgttgcgctactcggccgacttcggcacc
gacgctgacgcactgcttaaaagcgcgtgcgagatgtcgctcgaaggcatcatcggcaag
cggcgcgacagccgctatgcgtcaggccgctcgtcggcgtggatcaagctcaaatgccgg
cggcgccaggagttcgtgatcggcggctatacggaaccgggcggtagccgcgcggatttc
ggcgcgttgctgctcggcgtctacgacgaagacggcaagctccgttatgcgggccgcgtc
ggcacgggcttcgatgcgaagcggctgcgcgccgtgaaaaaagagctcgacgcgcgcgag
acctcaaagatgccgttcgcgagcgtgccgagcgaacgcagccggacacccgtgcattgg
gtcaagcccgagctggtcgccgaatgcaatttcgccgaattgaccgatgaaggcatcgtt
cgccaggcctcgtttatcagcctgcgcagcgataaacccgcgcgacagatcgtgatcgaa
gcaccgcgcaaaggagctgatgtgcaacagaccagtgacgaagagactgccgcttcgcga
agcacaccgcgcacgaagacgcgcgcggcggcgtcgcagggcgcagcgaaagacgacggc
acggcggcaacgaaacgcgccggcaaggcgtccgcttcacgcaaagccgcgcactctgaa
agcgacaatgagcccgaagcggcgcccgcctcgcgcacgtcgaaagcgaagggcgccacg
cagaccgtcgcaggcgtgcgcatttcgcatccggaccgcgtgatcgacaagcacaccgac
acccggaagatcgagctcgtgcgctactacgaatcggtggccgactggatgttgccgcat
ctgcgcgatcgcccggtgtcgctcgtgcgcgcgcccgaggacatcggcggcgagctgttt
ttccagaagcacgcggaaaagctgtcgattccgaatatcacgcagcacccggggctcgac
cccggacacccgtcgctgattacgatcgatagcgcgaaggcgctggtcggcgcggcgcag
atgggcacgatcgaactgcatacctggaacgcggtggcgtcgaatatcgagaagcctgat
cgcgtcgtgttcgatctcgatccggatgcggcgctcggctgggagcgcatgatcgaagcc
gcgcaactgacgcacacgctgctcgacgaactggggctggtgtcgttctgcaaaacgagt
ggcggcaagggcctgcatatcgtggtgccgctcacgaaacacgagggctgggacgaagtg
aaggcgttctcgcaggctgtcgcgcagcatatggcgacgacgctgccgaaaaacttcgcc
gcgaagatgggcgcgcagaaccgcaagggcaagattttcgtcgactacctgcgtaacaac
cgcggctcgagcacggtcgctgcgtattctgcacgcgcgcgcccgggccttggcgtctcg
gtgccgctgacatgggatgaagtgccggaaacgacggccggcgaccagtggaatatcgcg
aatctgcacgagcgcttgcagtcattgcgcgaggatccgtgggccgcttacgcgaagacg
cggcagcgcatcacggcggcgatgcgaaaacgcctcgcgggcgaacgcgggtag
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