KEGG   Pedobacter endophyticus: IZT61_03730
Entry
IZT61_03730       CDS       T07452                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pex  Pedobacter endophyticus
Pathway
pex03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IZT61_03730 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pex03400]
    IZT61_03730 (ligD)
Enzymes [BR:pex01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IZT61_03730 (ligD)
DNA repair and recombination proteins [BR:pex03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IZT61_03730 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme GH3 DNA_primase_S
Other DBs
NCBI-ProteinID: QPH40402
UniProt: A0A7S9Q076
LinkDB
Position
complement(935712..938411)
AA seq 899 aa
MSLEKYTAKRDFTKTAEPKAGRSKDKNKLLFVIQKHDATRLHYDFRLEMDGVLKSWAVPK
GPSTDPKVKRLAMMVEDHPFDYRNFEGIIPKGEYGGGTVIVWDEGTYEPIEEIKGKKAQE
KHLLKQLNEGSLKIKLHGEKLNGEFALVKTHGMGENGWLLIKHKDDYASTKDITKQDKSI
LSGKTIETMEKTSEKVWKDGKEQKVKKKPKAAVKTDNKNEEAVGADVKLNVQDILKKAPK
SAMPTGMKPMLATLVDEPFDNEDWQYEVKWDGYRALAFLNKGNAELFSRNNKSFDDKFYP
IHKLLSKWKLNAVFDGEILVLNEKGISNFGALQNWRSEADGELVYYIFDLLWYEGKNLMD
LPLVERQAVLNEILPTDDDRVRLGKVFKASGIDFFAAAQKMGLEGIIAKKTDSLYSPDRR
SKEWLKIKVHKRQEVIIGGFTKNEDTSKSFSSLLLGVYEGKKLRYVGKVGTGFSDKVQKE
MMKLFKPLIIDETPFEEIPDVNKPSRFRPNPPRAKATWLKPELVCEVAFTEVTDDGVFRH
PSFQGMREDKKATDVVREKEAETDEIIEQVEKEEDKHHTAVKPPKGKEPKTLLNPKEQTQ
VRKIKGHELKFTNLSKVYWPEDKVTKRDMFNYYYQVAEYIMPYLKDRPQSLNRFPGGIHG
PSFYQKDVKGKAPDWAKTFPYHTSDGEDKEYLVGTDEASLLWMASLGCIEMNPWFSRVQS
PDNPDYCVIDLDPDKHTFDQVVEAAQETKKILDAIDVPSFCKTSGSTGMHIYIPLNAKYS
YDQSQMFAKIIVSLVHQQIPEYTSLERMISARKGKMYLDFLQNRPGATIAGPYSLRPKVG
ATVSMPLHWDEVKPGLKMKDFNIFNAIDRLRVEGDLFKGVLGKGIDLKKAIEKAKTVFG
NT seq 2700 nt   +upstreamnt  +downstreamnt
atgagccttgagaaatatactgcaaaacgagacttcaccaaaaccgccgaaccgaaggcc
ggacgaagtaaggacaagaataagctgctttttgtaattcaaaaacacgatgcaacccgc
ctgcattacgatttcaggttggaaatggatggtgttttaaaaagttgggcggtgccaaaa
ggtccgtctaccgaccctaaagttaagcgcctggccatgatggttgaagatcatcctttt
gattacagaaatttcgagggaattatccccaaaggggagtacggcggtggaaccgtaatt
gtttgggatgaaggaacgtacgaacctattgaggagattaagggcaaaaaagcgcaggaa
aaacacttgcttaagcaactgaacgaaggctcactaaagattaagcttcacggtgaaaaa
ctcaatggcgaatttgcattggtaaaaacgcatggaatgggcgaaaacggctggctgtta
attaaacataaagacgattatgcctcaactaaagacattaccaagcaagataaatccatt
ctatctggcaaaaccatagaaacgatggagaaaacatcagaaaaggtttggaaggatggt
aaagagcagaaagttaaaaaaaaaccaaaagccgcagtcaaaacggataacaaaaacgaa
gaggccgttggcgctgatgttaagctgaacgttcaggatattttgaaaaaggcgcccaaa
tcggccatgccaaccggaatgaaaccgatgttggccacgctggttgacgaaccttttgat
aatgaagactggcagtatgaggtaaaatgggatggctaccgggcgcttgctttcttaaat
aagggcaatgcagagctattttcgagaaacaataaatcgttcgacgataagttttatccc
atccataagttgttaagcaagtggaaactgaacgcagttttcgacggcgaaattttggtg
ctcaacgaaaaaggaatctcaaactttggcgctttacaaaactggcgaagcgaggccgat
ggcgagctggtctattatattttcgatttgctgtggtacgaagggaaaaatttgatggac
cttccgcttgtggagcgacaggctgttttgaatgaaatattgccaaccgacgatgaccgc
gtgcgcttgggcaaagtctttaaagccagtggaatcgactttttcgcggcagcccaaaaa
atgggtctcgaaggaataattgcaaaaaaaaccgatagcctgtactcacccgatcgcaga
tcgaaagaatggctaaaaattaaggtacacaagcgtcaggaggttattattggcggcttt
accaaaaatgaagatacgtctaaatcgttcagctccctgttgttaggcgtttacgaagga
aaaaaattgcggtatgtaggcaaggttggaacgggtttctcagataaggtgcaaaaggaa
atgatgaaactttttaagccattgattattgatgaaacgccttttgaagaaattcctgat
gtcaataagccatcgcgatttaggcccaatccgccccgggccaaagccacctggttaaaa
cccgaactggtttgcgaagtagcttttaccgaggttaccgacgatggtgtgttcaggcac
ccttcctttcaaggcatgcgtgaggataaaaaagccactgatgtagtacgcgaaaaggaa
gcagaaaccgacgaaattatcgagcaggttgaaaaggaagaagataaacaccatactgcc
gtaaagccccccaaaggcaaagagccgaaaacgcttttaaaccctaaagaacaaacgcag
gtaaggaagataaaagggcacgaacttaaatttaccaacctgagcaaagtgtattggcct
gaggataaggtgaccaaacgcgatatgtttaattattattatcaggttgccgaatatata
atgccttatttaaaagatcggccccagtcgttaaaccgatttcccggtggcattcacggc
ccgagtttttaccagaaagatgtgaagggcaaagcgcccgattgggcaaaaaccttccct
taccataccagcgatggcgaggataaagaatatttggtgggtactgatgaagcctcgttg
ctttggatggccagtttgggctgcatagaaatgaatccctggtttagccgcgttcaaagc
cccgataaccctgactattgcgttatagaccttgatcccgataagcatactttcgatcag
gttgtggaagccgcacaggaaaccaaaaaaattcttgatgccattgatgttcccagtttt
tgcaaaacctccggctcaaccggcatgcatatttacattccgctcaacgcaaaatatagt
tacgatcaaagccagatgtttgccaaaattatagtcagcctcgttcatcagcaaatacct
gaatatacatcgctcgaaaggatgatttcggcacgtaaaggaaaaatgtatctcgatttt
ctgcaaaacagacccggcgcaactattgccgggccgtactctttaagacctaaagttggc
gctacggtgtctatgcccttacattgggacgaggtgaagccgggcctaaaaatgaaagac
tttaacatttttaatgccatcgatcggttaagggtagagggcgatttatttaagggtgta
ttaggcaaaggaattgacctcaaaaaagcgatagaaaaggcgaaaacggtgtttggttaa

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