Pedobacter endophyticus: IZT61_03730
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Entry
IZT61_03730 CDS
T07452
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IZT61_03730 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_03730 (ligD)
Enzymes [BR:
pex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IZT61_03730 (ligD)
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IZT61_03730 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
GH3
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPH40402
UniProt:
A0A7S9Q076
LinkDB
All DBs
Position
complement(935712..938411)
Genome browser
AA seq
899 aa
AA seq
DB search
MSLEKYTAKRDFTKTAEPKAGRSKDKNKLLFVIQKHDATRLHYDFRLEMDGVLKSWAVPK
GPSTDPKVKRLAMMVEDHPFDYRNFEGIIPKGEYGGGTVIVWDEGTYEPIEEIKGKKAQE
KHLLKQLNEGSLKIKLHGEKLNGEFALVKTHGMGENGWLLIKHKDDYASTKDITKQDKSI
LSGKTIETMEKTSEKVWKDGKEQKVKKKPKAAVKTDNKNEEAVGADVKLNVQDILKKAPK
SAMPTGMKPMLATLVDEPFDNEDWQYEVKWDGYRALAFLNKGNAELFSRNNKSFDDKFYP
IHKLLSKWKLNAVFDGEILVLNEKGISNFGALQNWRSEADGELVYYIFDLLWYEGKNLMD
LPLVERQAVLNEILPTDDDRVRLGKVFKASGIDFFAAAQKMGLEGIIAKKTDSLYSPDRR
SKEWLKIKVHKRQEVIIGGFTKNEDTSKSFSSLLLGVYEGKKLRYVGKVGTGFSDKVQKE
MMKLFKPLIIDETPFEEIPDVNKPSRFRPNPPRAKATWLKPELVCEVAFTEVTDDGVFRH
PSFQGMREDKKATDVVREKEAETDEIIEQVEKEEDKHHTAVKPPKGKEPKTLLNPKEQTQ
VRKIKGHELKFTNLSKVYWPEDKVTKRDMFNYYYQVAEYIMPYLKDRPQSLNRFPGGIHG
PSFYQKDVKGKAPDWAKTFPYHTSDGEDKEYLVGTDEASLLWMASLGCIEMNPWFSRVQS
PDNPDYCVIDLDPDKHTFDQVVEAAQETKKILDAIDVPSFCKTSGSTGMHIYIPLNAKYS
YDQSQMFAKIIVSLVHQQIPEYTSLERMISARKGKMYLDFLQNRPGATIAGPYSLRPKVG
ATVSMPLHWDEVKPGLKMKDFNIFNAIDRLRVEGDLFKGVLGKGIDLKKAIEKAKTVFG
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgagaaatatactgcaaaacgagacttcaccaaaaccgccgaaccgaaggcc
ggacgaagtaaggacaagaataagctgctttttgtaattcaaaaacacgatgcaacccgc
ctgcattacgatttcaggttggaaatggatggtgttttaaaaagttgggcggtgccaaaa
ggtccgtctaccgaccctaaagttaagcgcctggccatgatggttgaagatcatcctttt
gattacagaaatttcgagggaattatccccaaaggggagtacggcggtggaaccgtaatt
gtttgggatgaaggaacgtacgaacctattgaggagattaagggcaaaaaagcgcaggaa
aaacacttgcttaagcaactgaacgaaggctcactaaagattaagcttcacggtgaaaaa
ctcaatggcgaatttgcattggtaaaaacgcatggaatgggcgaaaacggctggctgtta
attaaacataaagacgattatgcctcaactaaagacattaccaagcaagataaatccatt
ctatctggcaaaaccatagaaacgatggagaaaacatcagaaaaggtttggaaggatggt
aaagagcagaaagttaaaaaaaaaccaaaagccgcagtcaaaacggataacaaaaacgaa
gaggccgttggcgctgatgttaagctgaacgttcaggatattttgaaaaaggcgcccaaa
tcggccatgccaaccggaatgaaaccgatgttggccacgctggttgacgaaccttttgat
aatgaagactggcagtatgaggtaaaatgggatggctaccgggcgcttgctttcttaaat
aagggcaatgcagagctattttcgagaaacaataaatcgttcgacgataagttttatccc
atccataagttgttaagcaagtggaaactgaacgcagttttcgacggcgaaattttggtg
ctcaacgaaaaaggaatctcaaactttggcgctttacaaaactggcgaagcgaggccgat
ggcgagctggtctattatattttcgatttgctgtggtacgaagggaaaaatttgatggac
cttccgcttgtggagcgacaggctgttttgaatgaaatattgccaaccgacgatgaccgc
gtgcgcttgggcaaagtctttaaagccagtggaatcgactttttcgcggcagcccaaaaa
atgggtctcgaaggaataattgcaaaaaaaaccgatagcctgtactcacccgatcgcaga
tcgaaagaatggctaaaaattaaggtacacaagcgtcaggaggttattattggcggcttt
accaaaaatgaagatacgtctaaatcgttcagctccctgttgttaggcgtttacgaagga
aaaaaattgcggtatgtaggcaaggttggaacgggtttctcagataaggtgcaaaaggaa
atgatgaaactttttaagccattgattattgatgaaacgccttttgaagaaattcctgat
gtcaataagccatcgcgatttaggcccaatccgccccgggccaaagccacctggttaaaa
cccgaactggtttgcgaagtagcttttaccgaggttaccgacgatggtgtgttcaggcac
ccttcctttcaaggcatgcgtgaggataaaaaagccactgatgtagtacgcgaaaaggaa
gcagaaaccgacgaaattatcgagcaggttgaaaaggaagaagataaacaccatactgcc
gtaaagccccccaaaggcaaagagccgaaaacgcttttaaaccctaaagaacaaacgcag
gtaaggaagataaaagggcacgaacttaaatttaccaacctgagcaaagtgtattggcct
gaggataaggtgaccaaacgcgatatgtttaattattattatcaggttgccgaatatata
atgccttatttaaaagatcggccccagtcgttaaaccgatttcccggtggcattcacggc
ccgagtttttaccagaaagatgtgaagggcaaagcgcccgattgggcaaaaaccttccct
taccataccagcgatggcgaggataaagaatatttggtgggtactgatgaagcctcgttg
ctttggatggccagtttgggctgcatagaaatgaatccctggtttagccgcgttcaaagc
cccgataaccctgactattgcgttatagaccttgatcccgataagcatactttcgatcag
gttgtggaagccgcacaggaaaccaaaaaaattcttgatgccattgatgttcccagtttt
tgcaaaacctccggctcaaccggcatgcatatttacattccgctcaacgcaaaatatagt
tacgatcaaagccagatgtttgccaaaattatagtcagcctcgttcatcagcaaatacct
gaatatacatcgctcgaaaggatgatttcggcacgtaaaggaaaaatgtatctcgatttt
ctgcaaaacagacccggcgcaactattgccgggccgtactctttaagacctaaagttggc
gctacggtgtctatgcccttacattgggacgaggtgaagccgggcctaaaaatgaaagac
tttaacatttttaatgccatcgatcggttaagggtagagggcgatttatttaagggtgta
ttaggcaaaggaattgacctcaaaaaagcgatagaaaaggcgaaaacggtgtttggttaa
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