Pedobacter endophyticus: IZT61_13340
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Entry
IZT61_13340 CDS
T07452
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pex
Pedobacter endophyticus
Pathway
pex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IZT61_13340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pex03400
]
IZT61_13340 (mfd)
Enzymes [BR:
pex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IZT61_13340 (mfd)
DNA repair and recombination proteins [BR:
pex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IZT61_13340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPH38082
UniProt:
A0A7U3Q3W7
LinkDB
All DBs
Position
complement(3295854..3299192)
Genome browser
AA seq
1112 aa
AA seq
DB search
MNIRDLINRYKTDDRVTEFTKALNASKSPKIQLKGLVGSADAIVALSSYFLLHKPLFFVL
PDREEAAYFQSDLEGVLDKQVLLFPSSYRKSFDFTQVDTANVLARAEVLNELNHDSEFGK
IVVSYPEAIAEKVIDRSALEKNTLEISLGAKLGIDFINEFLIDYDFDRRDFVYEPGQFSI
RGGIVDIFSFSSDLPYRIEFFGDEVESIRSFDIESQLSVTDVKSLTIVPNVQAKFLTESN
ISILDYIDQDTQLWLKDVEFTLDIIKAGYKKAVELWKALPAADKAQNPEWIDPKFAFSDE
KLLGDHFHDFPLVEFGKQFFYKTDHRFEFETKPQPSFNKDFNLLIHNLKENEKAGIVNFI
FTDSPKQIERLYAILDDIDKTAKFTPINSMLREGFVDPEIQTAFYTDHQIFDRYYKYKLK
KGYQKSQAITLKDLRELKSGDYVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDLLY
VNINSLNRIAKYSGKESGVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIKLYALRKTQAG
TAFSPDGYLQTELEASFIYEDTPDQLKATQDVKKDMESPHPMDRLVCGDVGFGKTEIAVR
AAFKAVAEGKQAAVLVPTTILALQHFKTFSSRLKDFPVTVDYINRFKTSKQIKDTLARAA
EGKVDVLIGTHRLLSKDVKFKDLGIMIIDEEQKFGVAAKERLKAIRVNVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVSTELHVFNDKLIQEAVQFELDRGGQVFFIHNRVN
DLTQLGGMIQKLVPRARIGIAHGQLDGDALEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKEAEFKGLFENEPQ
RPFVGFTQVDTDLELYIPDAYITNITERYNLYTELSKLENETELAVFEKHLADRFGPVPQ
QVKTMLSVVRLQWLGKKLGFEKISFKKNSLRGYFLSDKQSAYFDSNTFTKILSFAQNHPR
MCNLKEVKNTLRIAFDNVSTVDEAIQTLELID
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgaacattcgcgatttaataaacagatacaaaaccgacgatagggtaaccgagtttacc
aaagcgttaaacgcctctaaaagtccaaaaatacaattaaaggggttagttggttctgcc
gatgccattgtggcgctttcgtcttacttcttactccacaagcctttgttttttgttctt
ccagatcgggaagaggcggcttactttcagtcggatttagagggagttttagataaacag
gtgttattatttccatcctcgtaccgtaaatcgttcgattttacgcaggttgacacagca
aatgttttggctcgtgcggaggttttaaacgaattaaatcatgattctgaatttggcaaa
atcgtggtttcctatcccgaggccattgccgaaaaggtaattgatcgttctgcgctggag
aaaaacacgctggaaattagccttggcgctaagctgggcatcgatttcattaatgagttt
ttaattgattacgatttcgacaggcgtgattttgtttacgaacccgggcagttttctatt
cgtggcggtattgtcgatatcttttccttttcttctgatttgccttaccgcatcgagttt
tttggcgatgaggtagaaagtatccgcagttttgatattgaaagtcagctttcggtaacc
gatgtcaaatcactcaccattgtaccaaatgtacaggccaagtttttaacggaaagcaac
atcagcattctcgattatattgaccaagatacgcagctttggcttaaagatgtagaattt
acgctcgatattataaaggcgggatataaaaaggcggttgagctttggaaggctttgccc
gcggcagataaagcgcaaaatccggaatggatcgacccgaaatttgcctttagcgacgaa
aagttgcttggcgatcacttccacgatttccccttggtagaatttggaaagcaatttttc
tataaaaccgatcatcgctttgagtttgaaacgaagccccagccatcgtttaataaagat
tttaaccttttaattcataacttaaaagagaacgaaaaggccggaattgtaaacttcatt
tttaccgattcgccgaagcaaattgagcgtttgtacgccattttagatgatattgataaa
acagccaagtttacgcccattaacagcatgttgagggagggctttgttgatccggaaatc
caaaccgcgttttataccgatcaccagatttttgaccgctactataaatacaagcttaaa
aaaggctaccaaaagagccaggcgattacacttaaagatcttcgcgaattaaaatcgggc
gattacgttacgcatatcgatcatggtattggaaaatatgcgggattggaaaaggtagaa
gtgaatggcaaaacgcaggaaatgattcgcctggtgtatgcagataatgacctgctttat
gtaaacatcaactcgctaaaccgcattgcaaaatacagcggaaaggaaagcggtgtgccg
aagatgaataaattgggtaccgatgcctgggataagctgaagaaaacaacaaaaaaaaaa
gttaaagacattgcccgcgatttgattaagctttatgccctgcgcaaaacccaggcgggt
acggctttttctcccgatggttatttgcaaaccgaattagaggcttcgtttatttacgag
gatacgcccgatcagttgaaagccacgcaggatgtaaaaaaggatatggaatcgccgcat
ccgatggatcgtttggtttgtggcgatgtgggtttcggcaaaaccgaaattgccgttcgt
gcggcctttaaagcagttgccgagggtaaacaggccgcagtgctcgtaccaactactatt
ttggcacttcaacattttaagaccttttcatctcgcctaaaagattttcctgttactgtt
gattacatcaatcgttttaaaacgagcaagcaaattaaagatacattggcaagagctgcc
gaaggaaaggttgacgttttaatcggtacgcaccgtttgctgagcaaagatgtgaagttt
aaagatttgggcatcatgattatcgatgaggagcaaaagtttggggttgccgctaaagag
cgtttaaaggccattcgtgtaaatgttgatacgttgacacttactgctacgccgattccg
cgaacgttgcacttctcgctaatgggggcaagagatttgtcgattatcagcacgccaccg
cccaaccgtcaacccgttagcaccgaactccatgtttttaatgataaactgattcaggag
gcggttcagtttgagcttgatcgcggcggacaggttttctttattcacaatagggtgaac
gacctgacgcaattgggcggaatgatacagaaactggtgcctagggcgaggattggcatc
gcacatggccagctagacggcgatgcgcttgaagatgtgatgcttgattttattaacggc
gaaaaagacgttttggtggccaccaccattattgaggccggcctcgatattccgaacgcc
aacaccatcatcatcaaccatgcccacatgttcggtttgagcgatttgcaccaaatgcgt
ggtcgtgtggggcgtagcaataagaaagctttctgttatttactgtcgccaccgttatct
acgcttacttctgaagccagaaaacgcttaagtgccattgaagagttttctgaccttgga
agcggtttcaacgtagccatgcgagatttggacatccgcggtagtggaaatttactgggc
gccgagcaaagtggtttcattgccgaaatcgggttcgaaatgtatcataaaattttggat
gaggccattcaggaattgaaagaagctgagtttaaaggcttatttgagaacgagccgcag
cgtccgtttgtgggatttacacaggttgataccgatttagagctttacattcccgatgcc
tacattaccaatattactgagcgttacaacctgtatacggagctatcgaagcttgaaaat
gagactgagctcgccgttttcgaaaagcatttggccgatcgtttcgggccggttccacag
caggtaaaaactatgttgagcgtggtgcgcttgcaatggcttggaaaaaagctgggcttt
gaaaaaattagttttaagaagaatagtttacgtggctattttctaagcgataagcaatcg
gcttacttcgattcaaatacttttaccaagatcttatcttttgctcaaaatcatcctcga
atgtgtaacttaaaagaggttaaaaacactttgcgcatcgcttttgataatgtaagcacg
gttgatgaggcgattcaaactttagaattaattgattaa
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