Pusillibacter faecalis: MM59RIKEN_16860
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Entry
MM59RIKEN_16860 CDS
T07635
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfaa
Pusillibacter faecalis
Pathway
pfaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MM59RIKEN_16860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfaa03400
]
MM59RIKEN_16860 (mfd)
Enzymes [BR:
pfaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MM59RIKEN_16860 (mfd)
DNA repair and recombination proteins [BR:
pfaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MM59RIKEN_16860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCK84367
UniProt:
A0A810QDJ6
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All DBs
Position
1654802..1658308
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AA seq
1168 aa
AA seq
DB search
MEHFLQQLAAIPEVAELIRRVDGGGCPAAVTGLQPVQRACVGAAVARASRRSAVFVCGDE
REVRQLAGDLETLMGVRPVILLSREWQLRPGAVASREWERSRLAALYDMARGEAAVVVAT
ADALMQRTLPPKLLNSLAVTLKTGGRADLKVLAESLLSAGYTRCDQVEGVGQFALRGGIL
DVFSPLMDQPVRCEFFDDEIDSMGSFDPATQRRTANVTSALLLPAAEVLPSAVPGGATDL
AERLLRLAEKLEKKPRTVETAAQLREDAQRLQNGAEVGGLDRYLAAVYPKAAAGVHYLPA
ESLVFLCESGRVDERVKNTLLQNKQDVEALLEAGVMAGEYGKLLLSAEELYTALEDHPVV
MMESLPTSRRPLVPRGLLGMTARQLSSYGGSLETAVTDLEHYRGSGSAVLVLCGGESRAN
NLQRLLEERRIPAVLDLKNAGMPEPGEVRISMGALSAGCEWPTIHLAVLTEGQLTGTVRK
RAKLKKESSRQKIQSYTDLSPGDLVVHVHHGVGRFAGIQRMPVDGVEKDYIKIDYAGGDC
LYVPVTQLDQVSKYIGGGEDQERARLNKLGGTEWAKQKTRAKKAAKDLAKGLTQLYAERQ
KRPGFAFSPDSPWQQEFEEAFPYAETDDQLRAIAEIKADMERPRPMDRLLCGDVGYGKTE
VALRAVMKCVLDGKQAAILVPTTVLAQQHYATAVGRFRDFPVKIEVLSRFTTAKEQKRIL
SAARSGGVDLLIGTHKLLQKSVEFKDLGLLIIDEEQRFGVTHKERLKEISRQVDVLTLSA
TPIPRTLNMALSGLRDMSTIEEPPADRQPVQTYVLEHDWALLEDAMRRELSRGGQVYYLH
NRVETIDLTASRIQKLLGPEVRVVTGHGKMGERELSAVMQAMVDGEADILVCTTIIETGI
DIPNVNTLIIEDADRMGLSQLHQIRGRIGRSVRRAYAYLTFRRGKVLQENAAKRLAAIRE
YVEFGSGFKVAMRDLEIRGAGNLLGPEQSGYLMTVGYDLYLKLLEEAVLEEQGQEKQIET
ECSADLTVNAHIPDRYVPSPEQRMDLYRRIAAIRSDEDASDLLDEMLDRYGEAPKSVLAL
LDVALLRAAAARSGVADISQRKDVLKFTLGVFRPEALVTVCGLHKYKGRLTIAAGDTPAL
TLKLSPGADVLETARTLVEDLRLAGGES
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggaacactttttacaacaattagcggccataccggaggtggcggagctgatccgccgg
gtggacggcggcggatgtccggcggcagtgaccgggctgcagccggtgcagagggcctgc
gtgggcgcggcggtggcacgggcttccaggcggagcgcggtctttgtctgcggcgatgaa
cgggaggtccggcaactggctggggacttggagacgctgatgggcgtgcgcccggtgatt
cttctcagccgggagtggcagctgcggccaggggctgtggcctcccgagagtgggagcgg
agccgtctggcggctttatatgatatggcccggggcgaggcggcagtggtggtggccacc
gccgacgcactgatgcagcgaaccctgcctccaaagcttctgaacagccttgctgtcacg
ttgaagacgggaggccgggcggatttaaaggttctcgcagagagcttgctctctgcgggc
tatacccggtgcgaccaggtagagggcgtgggccagttcgccctgcggggcggcatcctg
gatgtgttctctcccctgatggatcagccggtgcggtgtgagtttttcgacgatgaaatc
gactccatggggagctttgatccggccacccagcggcggacagccaatgtaacctccgct
ttgctgctgccggcggcggaggtgctgccctccgccgtgcccggcggcgcgacggacctg
gcggagaggctcctgcgtctggcggaaaagctggagaaaaagccgcggactgtggagact
gccgcccagctgcgggaggacgcccagcgactgcaaaacggcgcggaggtcgggggactg
gatcggtatctcgcggccgtctatccaaaggcggcggcgggcgtccactacctgccggcg
gagagtctggtgttcctctgcgaaagcgggcgggtggacgagcgggtgaagaacaccctg
ctgcaaaataaacaggatgtggaggccttactggaggccggagtgatggcgggggaatat
gggaagttgctgctttccgccgaggaactctacaccgcgctggaggaccatccggtggtg
atgatggaatctctgcccacctcccgccgtcccttggtaccccgggggctgctgggaatg
acggcgcggcagctctcctcctatggcggcagcttggagacggcagttacggatctggag
cactaccggggcagcggcagcgccgtgttggtgctgtgcggcggagagagccgggcgaac
aatctccagcggcttttagaggagcggcggattccggcggtgttggatttgaagaacgcc
ggaatgccggagccgggagaggtgcggatttccatgggcgcgctgtccgccggctgcgaa
tggccgacgattcatctggccgttttgacagaggggcagctgaccggcacggtccggaaa
cgggcgaagctgaaaaaggagagcagccgccagaaaatccagtcctatacagacctctca
cctggggacttggtggttcatgttcaccatggcgtgggccggtttgccggcatccagcgg
atgccggtggacggggtggagaaggactatattaaaattgattacgctggcggcgactgt
ctctatgtcccggtaactcagctagaccaggtcagcaagtatatcggcgggggcgaggac
caggagcgggcccggctcaacaagctgggcggcacggagtgggccaagcagaagacccgg
gcgaagaaggctgccaaggacttggcgaaggggctgacgcagctgtacgccgaacggcag
aagaggcccggctttgccttttccccggactccccctggcagcaggagtttgaggaggcc
tttccctatgccgagacggacgaccagctccgggccatcgcggagatcaaggcggatatg
gaacggccccggcctatggaccggcttctgtgcggtgacgtaggctacggcaagacggag
gtggcgctgcgggcggtgatgaagtgcgtgctggacggcaaacaggcagccattttggtg
cccaccacggttctggcccagcagcattacgcaacggcggtggggcgattccgggacttc
ccggtgaagattgaggtgctctcccgcttcaccacggccaaggagcaaaagcgcattctc
tccgccgcccggagcggcggcgtggacctgctgatcggcacgcacaagctgcttcaaaaa
agcgtggagttcaaagacctggggcttttgattattgacgaggagcagcgcttcggcgtc
acccacaaggagcggctcaaggagatcagccgccaggtggacgtgctgacgctctccgca
acgcctatcccccggacgctgaacatggccctctcgggactgcgggatatgagcaccatt
gaggagcctcccgctgaccgccagccggtgcagacctacgtcctggaacacgactgggcg
ctgctggaggacgccatgcgccgggaactcagccggggcggacaggtctattacctccac
aaccgggtggagaccattgacctcaccgcctcccgcattcagaagctgctgggaccggag
gttcgggttgtcaccggacacggaaagatgggggagcgggagctctccgccgtcatgcag
gcgatggtggacggagaggcggacatcctggtatgcaccaccatcattgagacgggcatt
gatattcccaacgtcaacacgctgattattgaggacgcggaccggatggggctgagccag
ctccatcagattcgcggccgtattggacgcagcgtccggcgggcttacgcctatctgaca
tttcgccggggcaaggtcttgcaggagaacgccgccaagcgcctcgcggccatccgggag
tatgtggagttcggctccggcttcaaggtggccatgcgggacctggagatccggggggcc
ggcaacctgctggggccggagcagtccggctatctcatgaccgtgggttatgatctctat
ttgaagctgctggaagaggcggttttggaggagcagggccaggagaagcagatcgaaacg
gagtgctctgcggatcttacggtcaacgcccatattccggaccgttatgtgccctctccg
gagcagagaatggatttgtaccgccgcatcgccgccatccgcagcgacgaggacgcctcg
gacctgctggacgagatgctggaccgctacggcgaggcgcccaaaagcgtgctggcgctg
ctggatgtggcgctgctgcgtgcggctgcggcccgctctggcgtggccgacatctcccaa
cgcaaggatgttttgaaatttaccctgggcgtctttcgccccgaggccctggtgacagtg
tgcggcctgcacaagtacaagggccggctgaccatcgccgccggggacaccccagccctg
acgctgaagctctccccgggcgcggacgtgctggaaaccgccaggaccctggtggaggac
ctgcggctggctggcggcgagtcctaa
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