Phascolarctobacterium faecium: PFJ30894_02378
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Entry
PFJ30894_02378 CDS
T05784
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfac
Phascolarctobacterium faecium
Pathway
pfac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFJ30894_02378 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfac03400
]
PFJ30894_02378 (mfd)
Enzymes [BR:
pfac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFJ30894_02378 (mfd)
DNA repair and recombination proteins [BR:
pfac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFJ30894_02378 (mfd)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
ResIII
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBG64701
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Position
complement(2452524..2454371)
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AA seq
615 aa
AA seq
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MLHKYVGNEGQAPRLSKMGGADWKRVQSKARAAITELAEELLRLYAQRKIVPGHAFAEDT
EWQRDFEERFPYEETPDQLKAIAEIKADMEKPEPMDRLLCGDVGYGKTEVAIRAAFKAVM
DGKQVAVMVPTTVLAQQHFMTFKERMQPFGVKVEMVSRFCTPREQKRILNDLENGQVDVL
IGTHRLLQQDVLFPDLGLLVIDEEQRFGVAQKEKIKRWKTGVDVLTLSATPIPRTLHLAL
VNGRDMSVIESPPEERLPVETYVAEYNPGMIKEALEREMRRGGRIYYVHNRVLGLENIAA
DLRSLVPGINIRIAHGQMSEDMLEDAMIAFYEGSCDVLLSTSIIENGLDVPLANTIIIDG
AENFGLSQLYQMRGRVGRSSRLAYAYFVYKRNRALSEVAEKRLQAIRDFTELGAGFKIAM
RDLEIRGAGNLLGAQQHGHIAGVGFAAYCDMLERTIRKLKDGVEDGIPEPDPVLEISVDG
YIPDDYIADPRYKLELYRRFAGLDYGEKDDLLDEIIDRFGEPPEEVEVLWRVACLRALCR
LLHIRGISVKPGELRITFAENAAIDPNALMQLISEQQQYMNFKSGAQAQLIFRTVKLKTD
SLTWLEKNLPRLAFD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgctgcataaatatgtcggtaacgaagggcaggctccaaggctttctaaaatgggcgga
gccgactggaaacgtgtgcagagtaaagcccgtgccgcgattaccgaactggctgaagaa
ctgctgcgattatacgcgcagcgtaagatcgtccctggtcatgcttttgctgaggatacc
gaatggcagcgtgactttgaagagcgcttcccttatgaagaaactccggatcagcttaaa
gcgatcgcggagatcaaggctgatatggaaaaacctgagccgatggacagattgttgtgc
ggtgatgtcggttatggtaaaacagaagttgctatccgcgctgcttttaaggcagttatg
gatggtaaacaggtagcagtaatggtgccgacgactgttttggcgcagcagcattttatg
accttcaaagaacgaatgcagccttttggggtcaaagtagagatggtaagccgcttctgc
actcccagggaacaaaaacgaatcctgaatgatctggaaaatggtcaggtggatgttctg
attgggacacaccgtttattacagcaggatgtgctgtttcccgatctgggattacttgtc
atcgacgaagaacagcgttttggtgtggctcagaaagaaaaaatcaaacgttggaaaaca
ggcgttgatgtgttgaccttgtcggcgacaccgattccgcgtactttacatttggcgctt
gtcaacggacgcgatatgagtgtgatcgaatcaccgccggaggaacggctgccggtagaa
acttatgtggccgaatataatcctggaatgatcaaagaagcgctggaacgtgaaatgcgc
cgcggcggcaggatttattatgtgcataacagggttcttggtctcgaaaatattgctgcc
gatctgcgcagtctggtgccggggatcaatatcaggatcgctcacggtcagatgtcagag
gatatgctggaagatgcaatgattgctttttatgaaggcagctgtgatgtgctgctgtcg
acttcgatcatcgaaaatggtttggatgtacccttggccaatactattattatcgacgga
gccgaaaattttggcttgtcgcagctgtatcagatgcgcggccgggtagggcgctcctct
cgtctggcttatgcctatttcgtctataaacgtaatcgtgctttgagcgaggtcgcagaa
aaacgtttgcaggcgattcgtgattttacagagctgggcgccgggtttaagatcgcgatg
cgtgatctggagatccgtggtgccggtaatctgctgggggcgcagcagcatggacatatt
gcaggtgtgggttttgctgcctattgcgatatgctggagcgtacgatccgtaagctgaag
gatggcgttgaagacggtatccctgaaccggatccggttcttgagatcagcgttgacgga
tatattcccgatgactatatagctgaccctcgttacaaacttgagctatacagacgcttt
gccggcttggactatggagaaaaagacgatctgcttgacgaaattatcgaccggtttgga
gaacctccggaagaggtggaagttttatggcgtgtggcctgtctgcgggctttgtgccgg
ctgctgcatattcgcggtatcagtgtcaaaccgggcgagctgcgtattacctttgctgaa
aatgctgctatcgatccgaatgccctgatgcagcttatcagtgagcagcagcaatatatg
aatttcaaaagcggcgcgcaggcccagcttattttccgcacagtcaaattaaaaactgac
agtttgacctggctggaaaaaaatctgccgcggctggcttttgattaa
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