Parabacteroides faecis: NXY11_04880
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Entry
NXY11_04880 CDS
T08643
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfai
Parabacteroides faecis
Pathway
pfai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NXY11_04880 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfai03021
]
NXY11_04880 (rho)
03019 Messenger RNA biogenesis [BR:
pfai03019
]
NXY11_04880 (rho)
Transcription machinery [BR:
pfai03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NXY11_04880 (rho)
Messenger RNA biogenesis [BR:
pfai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NXY11_04880 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
UVQ47579
LinkDB
All DBs
Position
1151532..1153568
Genome browser
AA seq
678 aa
AA seq
DB search
MQKYNILELNEKLLPELQSIAEELGIKKISSLKKEELVYRILDEQAISYAGLQAEKEKEK
EAKKAEKQTKAKKPSKTAAAKAPKAESKPKAAKSETAAVVAPEATEPVEEKKVAVVAEKK
AAVVAEKKEQPERKKRVRIEKKEKVAGAAVPANQTDEVKVTKTPQTVSTEVVVEKPLLPP
VVVEGAPEELPVVEAAPEVPAVPVQEAPEVPAVETPTANEPKRVVFRHPDTKSVLDQLFP
FSPSPAKPEKAAPQQPEQQNAPQPQQAQPQQNAPRQNNNRQNNQNNHNNQRNNNASQEKQ
YEFDGILIGTGVLEMMQDGYGFLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDVVEGAIR
PPKEGEKYFPLVKVDKINGRSPEDVRDRVPFDHLTPLFPDEKFMLTARKAPKVYDNIAVR
VVDLFSPIGKGQRGLIVAQPKTGKTMLLKDIANAIAANHPEVYMIILLIDERPEEVTDMA
RSVDAEVIASTFDEPAERHVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPA
SGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILATALTETGSKMDDVIFEEFKGTGN
MELQLDRKLSNKRIYPAVDITASSTRRDDLLQDESTLNRMWILRKYLSDMNSIEAMEFVK
KRMEQTYDNMEFLASMNG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatataacattctagaactaaatgaaaaactccttcctgaattgcagagtata
gcggaagagttgggaattaagaagataagttctttgaaaaaagaagaacttgtttatcgt
attcttgatgaacaggctatctcttatgcaggtttacaggcagaaaaggagaaagaaaaa
gaagctaagaaagctgaaaagcagacgaaagcgaagaaaccttctaaaacggctgctgca
aaagctccgaaagccgaaagcaaacctaaagctgcaaagtccgaaacggctgcggttgta
gctcctgaagccacagagccggttgaagaaaagaaagtagcggttgttgcagaaaagaaa
gctgcggttgttgcggaaaagaaggaacaacccgagcgtaagaaaagagtacgcattgaa
aagaaagaaaaagtggcaggtgcagctgttccggctaatcagacagatgaggtgaaggtt
actaagactcctcaaactgtctctacggaagtagttgtggaaaagcctttattaccaccg
gttgtggttgaaggtgctccggaggaattgccggtagtagaagccgctcctgaagttccg
gcagtaccggtacaggaagcccctgaagtcccggcagttgaaaccccgacagcaaacgaa
cccaagagagttgtattcagacatcctgacactaagtcggtgctcgatcaacttttcccg
ttctctccttcgccggccaaaccggaaaaagctgctccgcaacagcctgaacagcagaat
gctcctcagccgcagcaagcacagccgcagcaaaacgctcctcgtcagaataataacaga
cagaacaatcagaataaccacaataatcagcgcaacaataacgcatcgcaggaaaaacag
tacgagttcgatggaattctgatcggtacgggtgttttggaaatgatgcaggatggttat
ggttttctgcgttcttcggattataactacctgacttctccggatgatatatatgtatca
caatcgcagatcaaattgtttggtctgaagaccggtgatgtggtggaaggtgctatccgt
cctccgaaggaaggtgaaaaatatttcccgctggtaaaagtcgataagatcaatggccgt
tcgccggaagatgtgcgcgaccgtgttcctttcgatcatctgacaccgcttttcccggat
gaaaagttcatgctgacggctcgtaaagctccgaaagtatatgataatatagctgttcgt
gtagtcgatctgttctctccgatcggtaaaggtcagcgtggtctgatcgtggcacagcct
aagaccggtaagactatgttgctgaaagatatcgccaatgcaattgcagcgaaccatccg
gaggtatatatgatcatcctgttgatcgatgagcgtccggaagaagtaaccgatatggct
cgtagtgtagatgcggaagtgatcgcttctactttcgatgaaccggcagaacgtcatgtg
aagattgccgagatcgtattgaataaggctaaacgtatggtagaatgcggccatgatgtt
gttatccttctggactctatcactcgtctggcacgtgcttacaatacagttcagcctgct
tccggtaaggttctttccggaggtgtggatgcgaacgcgctgcagaagccgaaacgtttc
ttcggtgctgcccgtaacattgagaatggcggtagcctgacaatcctggcaacagcattg
acagaaaccggttcaaaaatggacgacgtgatctttgaagagtttaaaggtacaggtaat
atggagttgcagttggatcgtaagttgtctaacaaacgtatttatccggctgtcgatatc
acagcttcaagtactcgccgcgatgatctgttgcaggatgaaagtacattgaaccgtatg
tggatacttcgtaaatatctgtcggatatgaactcgatcgaagcgatggagtttgtgaag
aaacgtatggaacagacttatgataatatggaattcctggcttccatgaacggataa
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