Pseudomonas fakonensis: KSS94_08580
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Entry
KSS94_08580 CDS
T07698
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfak
Pseudomonas fakonensis
Pathway
pfak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSS94_08580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfak03400
]
KSS94_08580 (mfd)
Enzymes [BR:
pfak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS94_08580 (mfd)
DNA repair and recombination proteins [BR:
pfak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSS94_08580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QXH53156
LinkDB
All DBs
Position
complement(1902538..1905987)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPELPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQKVDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKAPY
RIDLFDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPMQKDEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETATLFDYLPANTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFMPVEDCFARLKQWPRVVVSSEDIDTGAGRERFPARALPNL
AIEAKANQPLAELSNFLDQFSGRVLFTAESAGRREVLLELLERLKLRPRTVENWADFVTG
NERLAITIAPLDDGLLLDDPALALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQAAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFAEWPVKVEVMSRFKSAKEVAAAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEAL
FERLAPQTT
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggtgccgccctcagcctggccatcgccgaagccgccagcagcgccggccgcttc
accctgctgttgaccgccgacagccaggcggccgaccgcctggagcaggagctgcgcttc
tttgcgcccgagcttccggtgctgcccttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcgcagcgcatcgccagcctgtaccggctgccggaa
ctggatcacggcatcctcgtagtgccggtgaccaccgccctgcaccgcctggcccccacg
cgcttcctgctgggcagcagcctggtgctggacgtgggccagaaggtcgacgtggagcag
atgcgcacccggctggaagccagcggctaccgctgcgtcgatacggtgtacgagcatggc
gaattcgccgtgcgcggcgcgctgatcgacctgttcccaatgggcagcaaggccccctat
cgcatcgatttgttcgatgacgagatcgaaaccctgcgcaccttcgaccccgagacccag
cgctcgatcgacaaggtcgactcgatccgcctgctgccggcccgcgagttccccatgcag
aaggacgaggtgacgcgcttcaaggcgcgtttccgcgagcgcttcgatgtggattttcgc
cgcagtgcgatcttccaggacctcaccagcggcatcatccccgctggcatcgagtactac
ctgccgttgttcttcgaagaaaccgccaccctgttcgactacctgccggccaacacccag
gtgttctcgctgccgggtgtcgagcaggccgcggagcacttctggaacgatgtacgcggc
cgctatgaagaccgccgcggcgacctcagccggccgctgctgccgccagccgaactgttc
atgccagttgaagactgcttcgcccgcctcaaacagtggccgcgggtggtggtcagcagc
gaggacatcgacaccggcgccgggcgcgagcgcttcccggcccgcgccctgccaaacctt
gccatcgaggccaaggccaaccagccgctggcggagctgtcgaacttcctcgaccagttc
agcggccgggtgctgttcaccgccgagtccgccggccggcgcgaagtgctgctggagctg
ctcgagcgcctgaagctgcgccccaggactgtcgaaaactgggccgacttcgtcaccggc
aacgagcgcctggccatcaccattgccccgctggacgacggcctgctgctggacgacccg
gccctggcgctggtggccgagagcccgctgttcggccagcgggtgatgcagcgccggcgc
cgcgagaaacgcggcgaagccgccaacgacgcggtcatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccacggtgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgagttcctcaccctcgaatacgccgaaaacgccaag
ctttacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgctgcaccggctgggctccgaagcctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgagctgctcgacatctatgcccgccgcgccgcgcgc
aagggttacgccttcgccgacccggccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaacccccgaccagcaggccgccatcgaagcggtgcgcgccgacatgctcgcc
ggccagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaaaaccgaggtcgcc
atgcgcgcggcgttcatcgccgtgcacagcggccgccaggtggcggtgctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgaatggccggtg
aaggtcgaggtgatgagccgcttcaagtccgccaaggaagttgcagccgccgcggcggag
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgttgcaggatgatgtg
cgcttcaaggacctgggcctggcgatcatcgacgaagaacaccgcttcggggtacgccag
aaagaacagctcaaggccctgcgcagcgaggtggacatcctcaccctcaccgcaacgccg
atcccgcgcaccctcaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgacgcctgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaggaggccctgctgcgtgagctgctgcgcggcggccaggtgtactacctgcacaacgac
gtgaaaaccatcgaaaaatgcgccgccgacctggccgagctggtacccgaggcgcgcatc
ggcatcggccacgggcagatgcgcgagcgcgagctcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagttgcaccag
ctgcgcggccgggtcgggcgcagccaccaccaggcctacgcctacctgctcacgccaccg
cgccagcaaatcagcagcgacgccgaaaaacgcctggaagccatcgccaatacgcaagac
ctgggcgcaggctttgtactggccaccaacgacctcgagatccgcggcgccggcgaactg
ctgggtgaaggccagagcgggcagatccaggccgtgggcttcacgctctacatggaaatg
ctcgaacgcgcggtcaaggccatccgcaagggcacccagcccaacctcgagcaaccactg
ggcggcggcccggagatcaacctgcgcctgccggcgctgatccccgaggactacctgccc
gacgtgcatgcgcggctgatcctgtacaagcgcatcgcctcggccgccgacgaagaaggc
ctgaaagacctgcaggtagagatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatgcgcctgaccctgctcaagctgcaggccgagaagctcggtatcaagaaggtc
gacgccggccccaacggcggcaagctggagttcgaggccgagacgccagtggacccgctg
accctgatcaaactgatccagggccaaccgaaacgctacaagttcgaaggcgcgacgcag
ttccgcttcctggtgccgatggaacgccccgaagaacgcttcaataccttggaggcgctg
ttcgagcgcctcgccccacagaccacttaa
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