Pseudomonas fluorescens A506: PflA506_1430
Help
Entry
PflA506_1430 CDS
T02114
Symbol
ligD_2
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PflA506_1430 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_1430 (ligD_2)
Enzymes [BR:
pfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PflA506_1430 (ligD_2)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PflA506_1430 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
AFJ58044
LinkDB
All DBs
Position
complement(1597854..1600415)
Genome browser
AA seq
853 aa
AA seq
DB search
MTDALNEYNKKRDFDATPEPSGAKKSTRKKKAEDHALQFCIQKHDASRLHYDFRIEIEGT
LKSWAVPKGPSLDPQVKRLAMEVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGIWKCIGD
PVESYKKGKLKFELEGEKLGGLWNLVRTHQEGKSKPWFLIKHQDSAAKPEAEFDVVKELP
DSVLSDRTIIPKKRGKQPKAKAVEEVPEPRKRAKTGKLTGAKPAPMPDLIKPQLATLVET
APAGDWRYEIKFDGYRMMARIDNGEVKLFTRNGHDWTSKLPRQAEALASLALQSAWLDGE
VIAADDEGVPSFQILQNAFESGKSQAIVFYLFDMPYLNGVDLREVPVEERRAALAQVVER
SEDDIIRFSEDFGEEASDLLTSVCQMHMEGLIGKRAGSTYVSRRSDNWIKLKCKHRQEFV
VVGYSEPKGARTSFGALLLGLHDKDSGELRYSGKVGTGFNERTLRTILEQLKPLETSKPA
VVNPPTGADARGVHWLKPELLAEVAYAEITKDGSVRHSVFHGLRNDKPAKEITEETPVPA
SDVQGKKTKPAAKKKPVKADPKPTSGKIRITHLDRVIDASSGSTKMQLAEYYVSIADWIL
PTLHDRPIALVRAPEGIAGELFFQKNVERLPIPGIETVEGESVMLINNAEALVGAVQKST
IEFHSWNAKAPDLDRPDRFVLDLDPDPSLPWKSMVEATTLTLTILDELGLKSFVKTSGGK
GIHIVVPLTPKDDWETVKGFSQKIVQHMAKLIPDRFSAVSGPKNRVGKIFIDYLRNGKGA
TTINAYAARTREGLPVSVPLFKEEVKEIKGANIWNIHNLHERLGELGEDPWKDYGKIKQT
ITADMRRMIGLKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgccctgaacgagtacaacaagaagcgtgatttcgatgccaccccggaacct
tcaggtgcaaagaaaagcacccgaaaaaagaaggcagaagaccatgctctgcagttctgc
atccaaaagcatgatgcctcccgtctgcactatgattttcgaatcgagatcgaaggcact
ctgaaaagctgggcagttccgaaaggcccaagtctagatccccaggtaaagcgtctggca
atggaggttgaagatcacccacttgattacgcaacctttgaggggaacatcccggaaggt
cattacggcgccggtgacgtgattgtgtgggatcggggaatatggaaatgcataggtgat
ccagttgagtcgtacaaaaaggggaagctgaaatttgagcttgagggcgaaaagctcggc
ggcctttggaaccttgtcaggacacaccaagagggcaaatcaaagccttggtttctcatc
aagcaccaggactcggctgcaaagcccgaggctgaatttgatgtggtaaaagagctgcca
gattcagttctgagtgatcgcacaatcattccgaaaaagcggggaaaacagcccaaggcc
aaagctgttgaagaggtgccggagccgcgcaaacgagctaaaacaggcaagctcactggc
gctaaaccagcaccaatgcccgacctaatcaaaccccagctcgctaccctagtggagacg
gcccccgctggtgactggcgttacgaaatcaagtttgatggctatcgaatgatggcaaga
attgataacggtgaggtgaagctatttacccgcaacggccacgattggacttccaagctg
ccccggcaagcagaagcattggcaagcctggctctccaatcagcatggcttgatggggaa
gtcattgccgctgacgatgaaggcgtacccagcttccagattctccagaacgctttcgag
tcaggtaagagccaagccatcgttttttacctgttcgacatgccctacctcaacggggta
gacctccgagaagttcctgtcgaagaaagacgtgcagcccttgcccaggtcgttgaacgc
agcgaagacgacatcatcaggttctcagaggattttggtgaggaagccagcgaccttctt
acctctgtctgtcaaatgcacatggagggtttgataggaaaacgtgcggggagtacatat
gtatcccgccgctcggataactggataaagctgaaatgtaagcatcggcaagagttcgtt
gtggtgggctatagcgagcccaaaggggctagaacgtcgtttggtgcacttctgctggga
ctgcatgacaaggacagcggcgagcttcgctacagcggtaaagtgggcactggcttcaac
gagcggaccctacgaaccatccttgaacagctaaagcctttggagacatctaaacccgcc
gtagtaaatccacctaccggggcagatgctcgtggtgtgcattggctgaaacctgaactg
ttggccgaggtggcctatgccgaaatcacgaaggatggttcggtacggcattcggttttc
cacggattacggaacgacaaacctgccaaggaaataaccgaagaaacaccagtgccggca
tcggatgtgcagggtaaaaaaacaaagcctgcggcaaagaaaaaacctgtcaaagctgac
ccaaagcccacctctggaaaaattcgtatcactcaccttgacagggttatagacgcatcc
agcggctctaccaaaatgcagctcgcagagtactacgtgagtattgccgactggattctt
cccacactgcatgacagacccatagcccttgtacgtgcccctgaaggcatagccggagag
ctgttctttcagaagaatgttgagcgtctacctatacccggcattgagacagtcgagggt
gagtcagtgatgctcatcaacaacgctgaagcactcgttggtgctgtacagaagagtacc
attgagttccattcctggaatgcaaaagcaccggatttggatcgtcctgatcgattcgtg
ctggacctcgaccctgatccatcattgccctggaaaagcatggttgaggctacaacccta
acgctgaccatccttgatgagctggggttaaagtcattcgtcaaaacgagtggcggcaag
gggatccatattgtggtcccactcacccccaaggacgattgggaaactgtgaaggggttc
agccagaagattgttcagcacatggccaagctcatccctgatcgattttcagccgtatca
ggcccgaagaatcgtgttggcaaaatcttcatcgactatctgcgcaacggcaaaggagct
actactatcaatgcctatgcagctcgtacacgcgaagggttgccagtgtcggtgcctctc
ttcaaagaagaagtgaaggagataaaaggcgcgaacatctggaatatacacaatctccac
gaacggcttggagagctgggggaagacccgtggaaggactacggcaaaataaaacaaacg
ataactgctgatatgcgtcgaatgattggactcaaaaaatag
DBGET
integrated database retrieval system
