Pseudomonas fluorescens A506: PflA506_1579
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Entry
PflA506_1579 CDS
T02114
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PflA506_1579 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_1579 (mfd)
Enzymes [BR:
pfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PflA506_1579 (mfd)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PflA506_1579 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AFJ58682
LinkDB
All DBs
Position
complement(1744149..1747598)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPASALPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLRLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgttactccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagtgccgaacggttggagcaggagctgagcttc
ttcgccccggatttgccggtgctgcattttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcgccgacc
aagttcctgctcggcagcagcctggtgctggacgtgggccagaagctcgacgtcgagcag
atgcgcacgcgcctggaagccagcggctaccgctgcgtcgacacggtgtacgagcacggt
gagtttgcggtgcgcggcgccttgatcgacctgttcccgatgggcagcaagctgccgtac
cgcatcgacctgttcgatgacgaaatcgagacgctgcgcaccttcgacccggagaaccag
cgttctatcgacaaggtcgactcgatcaagctgctgccggcgcgggagtttccgctgcaa
aaagacgcggtaacacgcttcaaggcgcgctttcgtgagcgcttcgatgtggatttccgt
cgctgcccgatcttccaggacttgagcagcgggattacacctgccggtatcgagtactac
ctgccgttgttcttcgacgagacctctaccctcttcgactacctgccccaggacacccag
gtgttctcgctgccgggtatcgaacaggcggcggaaaacttctggaacgatgtgcgcaac
cgctacgaagaacgtcgcgtcgatccatcccggcctttattgccgcccgctgaactgttc
ctgccagttgaagactgcttcgcgcgcctgaaaaactggccgcgtgtagtagccagccag
caggacgtggacgccggcagtggccgggagcgtttcccggcgagcgcgttgcccgatttg
gcgatccaggccaaagccacgcaaccgctggaggcgctgtcgaacttcctcggcgacttc
ccgggccgcgtgctgtttaccgccgaatccgccgggcgtcgcgaagtgctgctagagctg
ttggaacgcctgaagttgcggccgaaaaccgtcgacagctggcctgactttgtcgccagc
aaagaacgcctggcgatcaccatcgcgccgctggacgaagggctgcggttggatgacccg
gcgctggccttgatcgccgaaagcccgctgttcggccagcgcgtgatgcaacgccgtcgc
cgggaaaaacgcgccgatgccaacaacgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccatggcgtgggccgctacctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccctggaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ttggcgccgttgcatcgattgggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgaactgctcgacatctatgcccgccgtgctgcccgc
gaaggttatgccttcgctgaccccaaagccgattacgccaccttcagcgctggcttcgcg
ttcgaagaaaccccggaccagcaaaccaccatcgaagcggtgcgtgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgtgcagcctttattgcggtacacggcggtcgccaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaagtaatgagccgcttcaagtccgccaaggaagtgaatgccgccgtcgccgat
ctggccgagggcaaaatcgacatcgtcatcggtactcacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagtgaagtcgacatcctcaccctcaccgccacgcca
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcgtcgtttgtcggtgcgcacctttgtgatggagcagaacaagagcacggtc
aaggaagccctgctgcgcgaactgctgcgcggcggccaggtgtattacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgacctcgccgaactggtacctgaggcccgtatc
gccatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcgcagctgcaccaa
ttgcgcggtcgcgtcgggcgcagtcaccaccaggcctatgcctacctgctgacaccgccg
cgccagcagatcacttccgatgcggaaaaacgcctggaagcgatcgccaatacccaggac
ctcggggccggctttgtattggccaccaatgacctggaaatccggggtgccggtgaattg
ctcggcgacggccagagcgggcagatccaggcggtgggtttcacgctgtatatggagatg
ctcgaacgcgcggtaaaagccatccgcaaaggcgaacaaccgaacctcgaccaacccttg
ggcggcggcccggagatcaacctgcgcttgccggcgttgattcccgaagactacctgccg
gatgtgcatgcacggttgatcctgtacaagcgcattgcctcggcggccgacgaagaaggc
ctcaaggacttgcaggtagagatgatcgaccgtttcggcctgctgcctgaaccgaccaag
aacctggtgcgcctgaccctgctcaagttgcaggccgagcagttgggcatcaagaaagtc
gacgccgggccgcaaggcgggcgtatcgaattcgaagcgcagacgccggttgacccgttg
gtgctgatcaagctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgcgccgaagaacgcttcaacactttggaggcgctg
tttgaacgcctcattccgaaatccgtttaa
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integrated database retrieval system
