Pseudomonas ogarae: PSF113_2933
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Entry
PSF113_2933 CDS
T01734
Symbol
ligD2
Name
(GenBank) LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfe
Pseudomonas ogarae
Pathway
pfe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSF113_2933 (ligD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_2933 (ligD2)
Enzymes [BR:
pfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSF113_2933 (ligD2)
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSF113_2933 (ligD2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEV62937
LinkDB
All DBs
Position
complement(3448271..3450886)
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AA seq
871 aa
AA seq
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MSRKTLDDYNRMRDFAATPEPAAKRSRKSARTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPQDDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDQAARPESEYDVVQAEPN
SVLSDRTLVPKRRGKAATAKALKQPEKAVQAKSPRRAAKTTLSGAVAGPLPETLKPELAT
LVDSAPDGEWLYEIKFDGYRVMARIENGGVKLLTRNGHDWTHKLPRQAEALAALGLESAW
LDGEMVVANDQGVPDFQALQNAFEAGSSGKIAYYLFDMPYLNGMDLRKVPVQERRAALAA
VLEPNQSPLLRFSDAFEETPEALLNSACQMQMEGLIGKRIGSAYVSRRSNDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQRLLPLER
KEPAVANPPTGYEAKGVHWLEPTLLAEVAFAEMTKDGSVRHAVFHGLRNDKPAKEITQEL
AKPMKKTAATKKTKAKDEPGATPAKTKSKAKAPALDGKVRITHPERVIDASSGTTKLQLA
EYYASVAEFILPELADRPAALVRAPDGIAGELFFQKNAERLAIPGITSLDKALTGQPVMI
INNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVL
DELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNR
VGRIFIDYLRNGLGATTICAYAARTREGLPVSVPVFREEVAELKGANLWNVHNVHERLAQ
VGHEPWAGLKRTRQSITAEMRRRIGMRETDK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaaaaccctggatgactacaaccgcatgcgcgacttcgccgccaccccggag
ccggcggcgaagcgctcgcgcaaatcggcaagaaccgcccatgccttgcagttctgtatt
caaaaacacgacgcctcgcggctgcattacgattttcggctagagctggacggtgcgctc
aagagctgggcggtgcccaaaggcccctccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgctggattacgccacgttcgagggcaacatccccgagggtcat
tacggcgccggtgacgttatcgtctgggaccgcggcgtctggattccccaggatgatccc
catgaggcctatgaaaagggccggctcaagttcgaactgcaaggcgaaaagctcagcggc
ctgtggaacctggtgcgcacccacatgcctggcaagcaggagcagtggtttctgatcaag
catcaggaccaggccgcccgccccgagagtgaatacgacgtggtccaggccgaaccgaac
agcgtgctcagcgatcgcaccctggtgcccaagcgccgcggcaaggccgcgacagccaaa
gcgctgaaacaaccggaaaaggccgtgcaggcgaaatcgccaagacgcgccgcgaaaacc
accctcagcggcgcggtcgccggaccgttgccggagaccctcaagccggaactggcaaca
ctggtggacagcgcgcccgacggcgaatggctctatgagatcaagttcgacgggtaccgg
gtcatggcgcgcattgaaaatggcggtgtaaagctgctgacccgcaacggccatgattgg
acccacaaattgccaagacaggccgaagccttggctgcgctgggcttggaatcggcctgg
ctcgacggcgagatggtggttgccaacgaccagggcgtgccggacttccaggccttgcag
aatgccttcgaggccggcagcagtggcaagattgcctattacctgttcgacatgccgtac
ctcaatggcatggatttgcgcaaagtgccagtgcaagaacgccgggcggcattggccgca
gtgctggagcccaatcaaagccccttgctgcggttttccgatgctttcgaggaaaccccc
gaagcactgctcaacagcgcctgccagatgcagatggaagggttgatcggcaagcgcatc
ggcagtgcctacgtgtccaggcgcagcaacgactggatcaagctcaagtgcaagaatcgc
caggagttcgtggtggtgggcttcagtgatcccaagggcgctcgcagcgccttcggtgcc
ttgctgctggggctgcatgacgctgacagcggccagttacgctatgccggcaaggttggc
accgggttcaacgaaaccacccttaaaagcatctaccagcgactactgcccctggagagg
aaagagcccgccgtggcgaatccgcccaccggctacgaagccaagggcgtgcactggctc
gaaccgacgctgttggccgaagtggcctttgccgaaatgaccaaggacggctcggtacgc
catgcggtcttccatggcttgcgcaatgacaagccggccaaggagattacccaggagctg
gccaagccgatgaaaaaaaccgctgcgacaaaaaaaaccaaagccaaggatgagcctggc
gcgacaccggccaaaaccaagagcaaggccaaggcaccggccttggacggcaaggtccgc
atcactcatccggagcgggtcattgacgccagcagcggcaccaccaagctgcaactggcc
gagtactacgccagcgtggccgaattcatcctgccagaactggcggatcgcccggcggcc
ttggtcagggcgccggatggcatcgccggggaactgttcttccagaagaacgccgagcgc
ctggcgattcccggtatcaccagtctggacaaggcgctgaccgggcagccggtgatgatc
atcaacaacgccgaggcgctgatcggcgcggtgcagatgagcacggtggagctgcacacc
tggaatgccacctcggtcgatctggacaagcctgaccgcttcgtcctcgaccttgacccg
gacccggcgttgccctggaaaagcatggtcgaggcgacgcaactcacgttatcggtgctc
gatgagctggggctcaaggcgtttctcaagaccagcggaggcaagggcatccatgtggtg
gtgccgctgacgcgcaagctgggttgggacgaggtcaaggggttcagccatgcgattgtc
agtcacatggccaagctgctgccggaccgtttttcggcggtgtccgggccgaagaatcgg
gtagggcggattttcatcgattacctgcgcaatgggttgggcgctaccaccatctgtgcc
tacgccgctcggacccgggaagggttgccggtttcagtgcctgtttttcgtgaggaggtg
gccgagctcaagggggcgaatttgtggaatgtgcataacgttcatgagcgtctggcgcaa
gttgggcatgagccttgggctgggcttaagcgaactcggcagagtattacggctgagatg
cgtaggcgtattggtatgagggagacggataagtag
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