Pseudomonas ogarae: PSF113_3975
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Entry
PSF113_3975 CDS
T01734
Symbol
mfd
Name
(GenBank) Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfe
Pseudomonas ogarae
Pathway
pfe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSF113_3975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_3975 (mfd)
Enzymes [BR:
pfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSF113_3975 (mfd)
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSF113_3975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEV63972
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All DBs
Position
4674680..4678129
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALASFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDSQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgctgcaaagcgtttc
accctgctgctgaccgccgacagccaaagcgccgagcggctggagcaggagctgagtttc
ttcgctccggatttgccggtcttgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccgcaccaggacatcatttcccagcgaatcgccagcctttatcggctgccggaa
ctcagtcatggcgttttggtagtgccgatcaccacggccctacatcgcctggcaccgacc
caattcctgctgggcagcagcctggtgctggacatcggccagaagcttgatgtcgagcaa
atgcgtactcgccttgaggccagtggctatcgttgtgtcgacacggtgtacgaacacggc
gagttcgcggtacgcggcgccttgatcgacctgttcccgatgggcagcaaactgccttat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaagtgcagtcgatccgcctgttgccggccaaggagttcccgctgcag
aaagacgccgtgacccgcttcaaggcacgctttcgcgagcgcttcgatgtggatttccgg
cgctgcccgatcttccaggacctgagcagcgggatcacacccgccggcattgagtactac
ctgccgctgtttttcgaagaaacctccaccctgttcgattacctgccccaggacacccag
gtgttttccctgccgggcatcgagcaggccgcggaaaacttctggaacgatgtgcgcaac
cgctacgaagagcgtcgcgtcgatccttcccggcctctattaccgccggccgagctgttc
ctgccggtggaagactgttttgcccgcctcaagagctggccacgggtggtggcgagccag
caggacgtggaaaccggcgtcggccgtgaacgtttcccggccaaggcattgccggacctg
gccatcgaagccaaggccacgcaacctttggcggcgctggcgagctttctcgatgcattc
cccggtcgcgtgttgttcaccgccgaatccgcgggtcgtcgcgaagtgctgttggaactg
cttgagcgcctgaagctgcgaccgaagacggtggacagctggccggacttcgtcgccggc
aaggatcgcctggcgattaccatcgcgccgctgaacgacggcctggtcctggatgacccg
gccctggccctggtcgccgaaagtcctttgttcggccagcgcgtcatgcagcgccgccgt
cgcgaaaaacgcgccgacgctgccaacgacgcggtcatcaagaacctcaccgaactgcgc
gaaggcgcgcccgtggtgcacatcgaccatggcgtaggccgctacctgggcctggcgacg
ctggaaatcgacagccaggccgccgagttcctgaccctggaatacgccgagggcgccaag
ctctacgtgccagtggcgaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggccccgctgcaccgcctgggctcggaaacctggcagaaagccaagcgcaaggcggcc
gaacaggtgcgcgacgtggccgccgaactgctggacatctacgcccgccgcgcggcccgc
gagggctacgccttcgccgatccgaaagccgactacgaaactttcagcgccggtttccca
ttcgaagaaaccgtcgaccagcagaccaccatcgaagctgtgcgcgccgacatgctcgcg
cccaagcccatggaccgactggtgtgtggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgccgcgttcattgccgtgcacggtggcaagcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgctttgccgattggccggtg
accgtggaagtgatgagccgtttcaaatccaccaaggaagtgaacgccgccgtggccgat
ctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagtgaagtcgacatcctgaccctgaccgccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccggcggctgtcggtgcgcacctttgtcatggagcagaacaaaagcacggtc
aaggaagccttgctgcgcgagctgctgcgtggcggccaggtctattacctgcacaacgat
gtgaagaccatcgagaaatgcgccgccgacctggccgaactggtgccggaagcgcggatc
ggcatcggccacggacagatgcgcgaacgtgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagttgcaccag
ttgcgcggccgggtcgggcgtagccaccaccaggcctatgcctacctgttgacgccaccg
cgccagcagatcaccccggatgcggaaaagcgcctggaagccatcgccaatacccaggac
ctcggcgccggtttcgtgctggccaccaacgacctggaaatccgcggtgccggcgaattg
ctcggcgacggccagagcggccagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgaacgcgcggtcaagtcgatccgcaagggcgaacaaccaaacctcgatcaacccctg
ggcggcggaccggaaatcaacctgcgggtgccggcgctgatcccggaagattacctgccg
gacgtccacgcgcggctgatcctctacaagcgcatcgcctcggccagcgacgaggaaggc
ctcaaggacctgcaggtggagatgatcgatcgcttcggcctgctgccggaaccgaccaag
aacctggtgcgcaccacgctgctcaagctcaaggccgaacaactgggcatcaagaaagtc
gacggcggccccaacggcggccggatcgagttcgaggcccagacgccggtcgatccactg
gtgctgatcaagttgatccagggccagcccaaacgctacaagttcgaaggtgccacgatg
ttcaaattcatggtgcccatggagcgcgcggaagagcgcttcaataccgtagaggcgcta
ttcgagcgcctcactccgaccactgcttga
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