Paracoccus ferrooxidans: E3U26_19760
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Entry
E3U26_19760 CDS
T09619
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfeo
Paracoccus ferrooxidans
Pathway
pfeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E3U26_19760 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfeo03400
]
E3U26_19760 (ligD)
Enzymes [BR:
pfeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E3U26_19760 (ligD)
DNA repair and recombination proteins [BR:
pfeo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E3U26_19760 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WGR62948
LinkDB
All DBs
Position
pFER4:complement(559986..562529)
Genome browser
AA seq
847 aa
AA seq
DB search
MALETYRKKRDFAATPEPKGGRIRKGGDAFVVQKHAATRLHYDFRLELDGVLKSWAVAKG
PSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVILWDRGTWTPVGDPHQGYAKGH
LEFTLHGEKLHGRWHLVRMRGKPREKRENWLLIKGEDEFARTEDAPDILDERPESVKTGR
QIADVAGEAPGWSSKTGRIRKPAGRAKKPRAAPEPDPEPPEPAAVKGARKAAMPGFVEPM
LATLASAAPQGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTTRFGKAVPAALRDLP
VGAAILDGELVVETDAGASDFSALQADLSAGRSDRFAFYAFDLLYLDGYDLCRVPLVERK
ALLARLLGQEGGILRFSTHFDEGGALVLRHACRLSLEGIVSKLRDGPYRAGRGRAWIKSK
CSARQEFVVAGYVPSSVSRRAIGSLILGVYEQGGLQHVGRVGTGFSAAVAEDLFRRLERM
RIPDSPFAQRLTTDEARQARYVRPELVAEVEFRAWTADGHLRHAAFRGLREDKPAAEIVR
ETAKPAAKPPAPQRRRVRLTHPDRLYWPEEGVTKEGLADYHAEVWRWIAPWITGRPLALL
RCPNGIDGERFFQKHAWKGLNPHISLLRDPREPQGEPLIGIEDLDGLMGLVQSAALEIHP
WGATAADWERPDMITMDLDPGEGVAWPLVVEAARELRRRLEDHGLAGFVKTSGGKGLHVV
APLRPQAEWPAVKAFTKALADAMAADDPGRYVSTISKARRRGRILIDYLRNQRGATAVAA
YSTRARPGAAVSAPLRWDELDAGIGPAWFTLQNMPTRLATLGSDPWDGFRAAAAPLEAPR
SRRRKAG
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggagacctatcgcaagaaacgcgatttcgccgcgacgccggaacccaagggc
gggcgcatccgcaagggcggcgacgccttcgtggtccagaaacatgcggcgacgcggctg
cattacgatttccggctggagctggacggggtgctgaaaagctgggccgtcgccaagggg
cccagcctggtgcccggcgaaaagcgcctggcggtgcatgtcgaggaccacccgctggaa
tatggcgatttcgagggcaccatccccaagggcgaatatggcggcggcaccgtcatcctg
tgggatcgcggcacctggacgccggtcggcgatccgcatcagggctatgccaagggccat
ctggaattcacccttcatggcgaaaagctgcatggccgctggcatctggtccgcatgcgc
ggcaagccgcgcgaaaagcgcgagaactggctgctgatcaagggcgaggacgaattcgcc
cggaccgaggacgcgcccgacatcctcgacgagcggccggaatcggtcaagaccggccgg
cagatcgccgatgtcgcgggcgaggcgccgggctggtcctcgaagaccgggcgcatccgc
aagccggccgggcgggcgaaaaagcccagggccgcgccggagccggaccccgagccgccc
gaaccggcggcggtcaagggcgcgcgcaaggcggcgatgccgggtttcgtcgagccgatg
ctggccacgctggcctcggccgccccgcagggcgaacgctggctgcacgagatcaagttc
gacggctaccgcctgcaagcgcggatcgaggcggggcgggtcaagcttctgacccgcagc
gggctggactggacgacgcgcttcggcaaggccgtgcccgccgccctgcgcgacctgccg
gtgggcgcggccatcctggatggcgaattggtggtcgagaccgatgccggcgcctcggat
ttctcggccctgcaggcagatctcagcgccgggcgatccgaccgcttcgccttctatgcc
ttcgacctgctttatctggacggatacgacctgtgcagggtgccgctggtcgagcgcaag
gcgctgctcgcccggcttctgggccaggaaggcggcatcctgcggttcagcacccatttc
gacgaaggcggcgcactggtcctgcgccatgcctgccggctgagcctcgaggggatcgtg
tcgaagctgcgcgacgggccctatcgcgccgggcgcggccgggcctggatcaagtcgaaa
tgctcggcccggcaggaattcgtggtcgcgggctatgtcccctcgtcggtgtcgcgccgc
gccatcggctcgctgatcctgggcgtttacgaacagggcggcttgcagcatgtcggccgc
gtcggcaccggcttttccgccgccgtggccgaggatctgttccgccggctggagcggatg
cgcatccccgacagtccctttgcccaacgcctgaccactgacgaggcgcggcaggcccgc
tatgtccgccccgaactggtggccgaggtcgagttccgcgcctggaccgccgacggccac
ctgcgccacgccgccttccgcggcctgcgcgaggacaagccggcggccgagatcgtgcgc
gaaaccgcgaagcctgccgcgaaacccccggcgccgcagcggcggcgggtgcggctgacc
catcccgaccggctctattggcccgaggaaggcgtgaccaaggaagggcttgccgattac
catgccgaggtctggcgctggatcgcgccctggatcaccggccggccgctggcgctgctg
cgctgcccgaacggcatcgacggcgagcggttcttccaaaagcacgcctggaaggggctg
aacccgcatatctcgctgctgcgcgatcccagggagccgcagggcgagccgctgatcggc
atcgaggatctggacgggctgatggggctggtgcaatcggccgcgctggagatccacccc
tggggcgcgaccgccgccgattgggaacggccggacatgatcaccatggacctcgacccc
ggcgaaggcgtcgcctggccgctggtggtcgaggcggcgcgggagttgcgccggcggctc
gaggatcacggccttgccggtttcgtcaagacctcgggcggcaaggggctgcatgtggtc
gcgcccctgcgcccgcaggcggaatggccggcggtcaaggccttcaccaaggcgctggcc
gatgccatggctgccgacgatcccggccgctatgtctcgaccatcagcaaggcgcggcgg
cggggcaggatcctgatcgactatctgcgcaaccagcgcggcgcgacggccgtcgccgcc
tattccacccgcgcccggcccggcgccgccgtctcggccccgctgcgctgggacgagctg
gacgccggcatcggcccggcctggttcaccctgcagaacatgccgacgcggctggccacg
ctgggctcggacccctgggacgggttccgcgccgccgccgcaccgctcgaggcgccgcgc
agccgccgccggaaggccggctag
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