Pandoraea fibrosis: PI93_006250
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Entry
PI93_006250 CDS
T06385
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib00300
Lysine biosynthesis
pfib00550
Peptidoglycan biosynthesis
pfib01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PI93_006250
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PI93_006250
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfib01011
]
PI93_006250
Enzymes [BR:
pfib01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
PI93_006250
Peptidoglycan biosynthesis and degradation proteins [BR:
pfib01011
]
Precursor biosynthesis
Amino acid ligase
PI93_006250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
LpxK
Motif
Other DBs
NCBI-ProteinID:
QHF15617
LinkDB
All DBs
Position
1402312..1403850
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AA seq
512 aa
AA seq
DB search
MIADATERATLAQAWDWLCRTVPAGATLHADSRRITPGDVFVAYAVKGADSRGFIADAVE
RGAAAVLWQSDGFTWPASLVSLANVPEFGVPRLDWLAGPLAALWYGEPSVGMTMLGVTGT
NGKTSCSQWLAQLLSKAGTRSAVIGTLGSGFPGHLTVTGFTTPDAVQLQRSLDDLRAQGA
KAVAMEVSSHGLYQGRVNGVAFDVAVFTNLTQDHLDYHGTMAEYEAAKTRLFDWPALKAA
VINRDDAMGQRLLKRLAGKTPVYEYGVHGDAVSVHGNRVLRAEDIRATTAGTRFTLHIDD
HSQQITVPLIGEFNVSNALAVLGAALAAGVPQDAAIAGLATLTPVSGRMEQIGQPGQPLV
VIDYAHTPDALDKTLEALRPVAAARGGKLVCVFGCGGDRDAGKRPQMGTVAERLADAVVL
TSDNPRTEAPADIMAQIAAGLTQPGAARLIEDRASAILQAVRGAQAADVVLVAGKGHEST
QEIMGKKRPFSDQEHARLALAARATTVRGGGE
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcggacgccaccgagcgcgccacgctcgcacaggcatgggactggctgtgccgc
acggtgccggccggggcgacgttgcacgcggatagccgtcgcatcacgccgggcgacgtg
ttcgtcgcttacgcggtcaagggggcggacagccggggcttcatcgcggatgcggtcgag
cgcggcgcggctgccgtcctgtggcagagcgatggcttcacatggccggcatcgctggtc
agtctggcgaacgtgccggaattcggtgtgccgcgactcgattggctggccggtccgttg
gcggcgctgtggtacggcgagccgagcgtcggcatgacgatgctgggcgtgaccggaacg
aacgggaaaacgtcctgcagccagtggctcgcgcagttgctgtcgaaggcaggtacccgc
agtgccgtgatcggcacgctgggtagcggattccccggtcatttgacggtcacggggttc
accacgccggatgccgttcagttgcaacgcagcctcgacgacctgcgcgcccaaggcgcg
aaggcggtcgcgatggaagtctcgtcgcacggtctttatcaaggtcgcgtgaacggcgtg
gcgttcgacgtcgccgtcttcaccaatctgacgcaggaccacctcgattaccacggcacg
atggccgagtacgaagcggccaaaacgcgcctgttcgactggccggccctgaaggcggcg
gtcatcaatcgtgacgacgcgatgggccagcgcctgctcaagcgtctggccggcaagacg
ccggtatacgaatacggtgtgcacggcgacgccgtgtcggtgcatggcaaccgggtgttg
cgcgcggaagatatccgcgcgacgacggcaggcacgcgcttcacgctgcacatcgacgat
cacagccagcagattacggtgccgctcatcggtgagttcaacgtgagtaacgcactcgct
gtgctgggtgccgcgctggcagcgggtgtaccgcaagacgcggccattgccggactggcg
acgctcacgcccgtgtcaggtcgtatggaacagatcggccaaccgggacagccgctggtc
gtcatcgactatgcgcacacgcccgacgccctcgacaagacgctcgaagcgctgcgcccg
gtggcggcagcgcggggtggcaagcttgtctgcgtgttcggttgtggcggcgatcgcgac
gcgggcaagcgtccgcaaatggggacggtggccgaacgtctggccgacgccgtcgtgctg
acgagcgacaacccgcgcaccgaagcgccggccgacatcatggcgcagatcgccgcaggt
ctcacgcagccgggcgccgcacgtctcatcgaagaccgggcgagcgcgattctgcaagcc
gtgcgcggcgcgcaggccgccgatgtggtgctcgttgcgggcaagggacacgaaagtaca
caggaaatcatgggtaagaagcggccgttctccgatcaggagcatgcgcgtctggcactc
gccgcgcgtgcaaccactgtgcgcggaggtggcgaatga
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