Pseudocercospora fijiensis: MYCFIDRAFT_148374 Help Entry MYCFIDRAFT_148374 CDS       T03109                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism pfj  Pseudocercospora fijiensis Pathway pfj03013   Nucleocytoplasmic transport pfj03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:pfj00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     MYCFIDRAFT_148374    03015 mRNA surveillance pathway     MYCFIDRAFT_148374  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pfj03019]     MYCFIDRAFT_148374 Enzymes [BR:pfj01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      MYCFIDRAFT_148374     5.6.2.5  RNA 5'-3' helicase      MYCFIDRAFT_148374 Messenger RNA biogenesis [BR:pfj03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      MYCFIDRAFT_148374    mRNA cycle factors     Common to processing body (P body) and stress granule      MYCFIDRAFT_148374 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD Viral_helicase1 UvrD-helicase SLFN-g3_helicase PIF1 Helicase_RecD nSTAND3 AAA_22 AAA_16 Ribosomal_S13_N AAA_5 AAA_10 ATPase Motif Other DBs NCBI-GeneID:  19331394 NCBI-ProteinID:  XP_007921074 JGI:  148374 UniProt:  N1Q673 LinkDB All DBs Position Unknown AA seq 1091 aa AA seqDB search MEGTFTNVGNHLVGDSASAINAGDDVSTLDAAESALHTEYRATAGPRRRRGGGGDDDETD VYDDDDDDLESLASHAVNGANGQAPTGQHEEVELPAHACAYCGIHNPSSVVKCLTCAKWF CSARGNTSSSHIVNHLVRARHKEVQLHPSSPLGDTTLECYNCGTKNVFLLGFIPAKSDTV VVLLCRQPCAAMPSSKDMNWDTSKWQPLIEDRAFLPWLVNEPTDQELTRARYLPPPVIAK LEEMWKDNSSATIQDLEKSAGIDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEA QSQDNLIVRWDFGLNNKHLASFVLPKLELGDVKLAVGDEMRLRYTGELRPHWEGVGYVIK IPNNQSDEVTIELRSRGDHKSIPTECTHNFTADYVWKATSFDRMQHAMKTFAVDEMSVSG YIFHRLLGHDVNAAPLKVNMPRKFSVPNLPDLNGSQINAVKSVLQKPLSLIQGPPGTGKT VTSATIIYHLSKMNGGQVLVCAPSNVAVDQLCERIHITGLKVVRVTAKSREDAESNVGFL SLHRQVSMNDTNVELSKLKQLKDEQGELSSQDEKKFKALTRAAEREILQNADVICCTCVG AGDPRLAKFKFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAG LNQSLFERLVVLGCAPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGITMQQRLRKDVDFPW PVADSPMMFWSNLGNEEISASGTSYLNRTEAQNVEKIVTRFFKAGVSPSAIGIITPYEGQ RSYVVQSMQQTGTFKKEHYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRL NVALTRAKYGCVILGNPKVLSKHPLWHYLLLHFKERNCLVEGPLNNLQVSLLQFSRPKTS YRGPQRYQMAYQHANHMAAATGNRMNGRRDGPPGADGSVVGYIPDDVSSVHSSALGGAAL PTQYPAMFQGFQESWPQLPAGQRNGPIGDKTHAPPESIAGESVAASEITDVTTNGSVKPG QGGVSLAGLSINDLNKQASLSQSDKLRRYVEGQGAPQPPIGAGRNRSTLEDEDARSVSTA FASQVGVGGYD NT seq 3276 nt NT seq  +upstreamnt  +downstreamnt atggaaggaaccttcaccaacgtcggtaatcatttggtcggcgattcggcctccgccatc aacgccggcgacgatgtctccaccctcgatgctgccgagagcgcactgcatacggaatac cgcgcaaccgctggcccaaggaggagaagaggcggcgggggcgacgacgacgagactgac gtgtacgacgacgacgatgacgacttggagtcactggcaagtcatgctgtgaacggcgcc aacggtcaagctcccactggccagcacgaagaggttgagctcccagcgcatgcttgcgct tactgtggtattcacaaccctagcagcgttgtgaagtgcctcacttgcgccaagtggttc tgctctgctcgtggcaatacttcctccagccacatcgtcaatcatctggttcgcgctcgg cacaaggaggtgcagctgcatccctcctcgccgcttggagatactacacttgagtgctac aactgcggcaccaagaatgtctttctgctcggttttatccccgcaaagagcgacaccgtg gttgtgttgctctgccgtcagccatgcgccgccatgcccagcagcaaggacatgaattgg gatacctcgaaatggcagccactgatcgaggaccgtgctttcctgccatggctcgtgaac gagccaacggatcaggagctgacacgcgctcgctatttgcccccaccggtcattgctaag ctcgaagaaatgtggaaggataatagcagcgccacgatccaggatctcgagaagagtgct ggtatcgatgacgaacctgctcctgtcttgctacgatatgatgacgcataccaatatcaa aatgtgtttggtccacttgtgaagatcgaggcagactatgatcgtaagctcaaggaagct cagagccaggacaacttgatcgtgcgctgggacttcggtttgaacaacaagcatcttgct tcttttgtcctccccaagctcgagcttggagatgtcaagctggcagttggtgatgagatg cgactgcgctatacgggcgagttgcgaccacactgggagggtgtcggctatgtcatcaag atcccgaacaaccagagcgacgaagtgactatcgaactgcgatcgcgaggagaccacaag tcaataccgactgagtgcacgcacaacttcaccgccgattacgtttggaaagccacctct ttcgaccgcatgcagcacgccatgaagaccttcgctgtagacgagatgtctgtctctggt tacatctttcaccgtctgctcggtcacgacgtgaacgcagctccgctgaaggtgaatatg ccgcggaagttcagtgtgcctaatttgcccgacctcaacggctcgcagatcaatgctgtc aaatccgtactgcagaagccactttctttgattcagggacctccaggcactggaaagact gtcacttctgccaccattatctaccacttgtcaaagatgaacggtggccaagtcctggtt tgcgcaccgtccaacgtggccgtcgaccagctctgcgagcgtattcacatcactggactt aaagttgtgcgtgtcactgccaagtcgcgcgaggacgcggaatccaatgttggattccta tcacttcacaggcaggtttccatgaacgacaccaatgtcgagctttcaaagctcaagcag ctcaaagacgagcagggtgagctgtctagtcaggacgagaagaaattcaaggccttgact cgcgctgcggaacgcgagatcctacaaaacgcagacgtcatttgctgcacttgcgttggt gctggtgacccaagactcgcaaagttcaagtttcggacagttcttattgacgaaagcact cagtccgccgaaccagagtgcatgatcccgctagtcctcggatgtaagcaagttgtcctg gtcggcgaccatcagcagcttggtccggtcatcatgaacaagaaggctgccaaggctggt cttaaccagtctctgttcgagcgcctagtcgtacttggctgcgcacccattcgtctgcaa gtgcagtaccgtatgcatccatgcctatctgagttcccatccaacatgttctacgaaggc tcgctgcagaacggcattactatgcagcagcgcttgagaaaggatgtcgacttcccatgg cccgtcgctgactctcccatgatgttctggtccaatcttggaaacgaagaaatcagtgcc tctggtacatcctacctgaaccgcactgaggcccagaatgtcgagaaaatcgttactcgc ttcttcaaggcgggcgtcagcccttctgcgattggtataatcactccgtacgaaggacaa cgctcttatgtcgtacagagcatgcaacagactggcacgttcaagaaggagcactacaag gagatcgaagtagcgtccgtcgatgccttccaaggtcgtgagaaagacttcattgtgctc tcttgcgttcgaagcaacgatcaccaaggcattggtttcttgagtgaccctcgacgtctg aacgttgcactcactcgtgctaagtatggatgcgttatcctcggcaatccaaaggtactt agcaagcacccgctctggcactaccttctccttcacttcaaggagcgcaattgcttggtc gaaggtcctctcaacaacctccaggtgtcgctgctgcagtttagccgacctaagacgtcc taccgcggacctcagcgctaccaaatggcctatcagcacgccaaccatatggccgccgct accggtaatcgcatgaatggacgtcgcgatggacctccgggcgctgacggcagcgttgtc ggctacatccctgatgatgtgtcttcagtacactcttccgcgcttggtggtgccgcactt cccacccagtacccggccatgtttcaaggcttccaagagtcgtggccacagcttccagct ggtcagcgcaatggcccgattggcgacaagactcacgcacctccagagtccattgccggc gagagtgttgccgctagcgagatcacagatgtgaccacgaatggctctgtcaagccaggc caaggaggcgtcagccttgctggcctgagtatcaatgatctcaacaagcaggcatcgctt tcgcagtcagacaagcttcgtcgctacgtggagggccagggtgctccacaacctcctatt ggcgccggtcgcaaccgatctacgttggaagacgaggatgctcgcagcgttagcaccgca tttgcaagccaagtcggcgtaggtggctatgactga

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