Pseudocercospora fijiensis: MYCFIDRAFT_189548
Help
Entry
MYCFIDRAFT_189548 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
pfj
Pseudocercospora fijiensis
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfj03019
]
MYCFIDRAFT_189548
Enzymes [BR:
pfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYCFIDRAFT_189548
Messenger RNA biogenesis [BR:
pfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
MYCFIDRAFT_189548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
19335084
NCBI-ProteinID:
XP_007928614
JGI:
189548
UniProt:
M3A9W4
LinkDB
All DBs
Position
Unknown
AA seq
1815 aa
AA seq
DB search
MTMRMRMSEVARDDATRVLQEYRRLPSRRVDLVGDYAGDELFLIEGDSMLRRCFDDDKLD
FDVGLQLLHAAWTVEHFLHQLVKRKCNFHVVFFDSNRELCLPSPPQAQACPQRAARYYLA
RASIIRHLQAHVPKIHPSIAIDIFSSWQSPEFIEYLEHTSPYFVMLHDGAQADEKAVEDA
HANRPWSPDRIALRRMIGAFVERGFNIALVNGLEWRDTKVMTDVLESRRRTGKADESPHS
PPQLSLPPTLDVSEYASKLPSALTQRQRLAILTLAVISRSRQSSGATARLSAAFLLHLAL
LAHTPLSARRVHVSKPDEETTLFIDTLSSTAESILNSAAWPEATAHDDADSDLLDLIDGR
LFLIVAATKPSVSSEVKATFDKLLSALQAVSDASELDPSTAVERSTESTRESPSPATAKS
TVRVLPFSNKVFDQHLESVQLKIDSGPEGPKTLAARKIFREVTHWHNAKKPLVQKSVTAP
NTVQEARKKAREDKRNQLFMAEMRTYAASLTNAIGKSLEPETVIVGVPKQNTIRSATESP
AESDMSDSGSSAKGKGKPGKKGGGGKTAAKNAGKQAMLNNIAAAKAKKDEGTGDKIHGAW
KVACQGFEADRDPRARYRKAKQYLANIQPAWREIFGTEGELYLVNCLLLFWIDACRRKEQ
PGRQQVAALIWNHAKVIAQQSPLTKSIFKCVELTENTLKLPPLPAYSASPVDRKLAFDFA
LPAKAESLAISLPSTEFQLLECGPYLERSFDSKPDPRVDFKPDGWQRKVLDTIDAEKSAF
VVAPTSAGKTFISFYAMRKVLEADDDGVLVYVAPTKALVNQIAAEVQARYSKKFKYGGKS
VWAIHTRDYRINNPTGCQVLVTVPHVLQIMLLAPSHANSWSSRVKRIIFDEIHSIGQAED
GVVWEQLLLMAPCPIIALSATVGNPQEFSDWLATTQQAIGKELVTVQHPHRYSDLRKYFY
VPPKKFGFHGLPDKKAFGSLGLEGLTGFNFVHPVAGLIDKSRGIPEDLALEPRDCFTLWK
AMTEVQTKEHPVPSDLNPSKVLPEIIKKVDILAWEKDLKAILRAWLMDKTSPYDQLLQKL
ERSFRADKREELYRTSEDKQKAILKVESVKTSTLPLLCRLHEQDALPAILFNYDRLQCED
ICRSVVEQLQRAELKQVKSGKSWERTLERFEEYKKLKAKNNARTAKATSKKTKLQGDDDD
KSSKMDESREGDFSSKWEGFNPDGPADGYHFADYTKVLMSELDIFLRQLRKREIAEWLID
ALARGVGVHHAGMNRKYRQVVEILFRKGFLRVIIATGTLALGINMPCKTVVFSSDSVFLT
ALNYRQCAGRAGRRGFDLLGNVVFQGVSRQKVCRLLSSRLPDLNGHFPITTTLVLRLFSL
LHESKGAKYAVNAINALLSQPRLYMGGASFKDQTMHHLRFSIEYLRRQHLLGSDGAPLNF
AGLVSHLYFTENSSFAFHALLKEGYFHELCANINKNEKDTLETLMMILSHLFSRIKCRQA
DKEFREKVIKPSSSMVFLPPMPESASNILLEHNKQTLDVYRAYVETFVDQHIKDADRTLP
LTGLQAGAEGPIPSGINSLPPSRIRSSFVALSGADDTFDNIHDLCQTVRDGVFLEEAVIP
HMNVYPEEMSVPLNAYLLDFFKHGDVHTIEKANGIRRSEIWFLLNDFSLVLATIITSLMN
FMKLTESTDLDMLEVMGNMDAHEEAEDDKVAATESQSEASGPSIADSGIAMTDRTKPTKS
AAPTQKQSRNAESWEDLMGSESEEDEDVEQKAVEEVAEELAASWDGEGGEGLKDVLKAFQ
KLHAEFTVKFRAMWA
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgaggatgaggatgagtgaagttgcacgtgacgacgccacgcgcgtattgcaa
gaatatcgccgccttccatcacggcgcgtggatctcgtgggcgactatgcgggagacgag
ctcttcctcatcgaaggcgactcgatgttgcgccggtgctttgatgacgacaagctcgac
ttcgacgtgggcctgcaattgctccatgccgcgtggaccgtcgaacacttcctccaccag
ctcgtcaagcgaaaatgcaacttccacgtggtcttcttcgacagcaaccgggaattgtgc
ctcccctcacccccccaagcccaagcctgtccccagcgtgccgcacgatactacctcgct
cgggcatcgatcattcgccatctgcaagcacacgtgcccaagatccatccttccattgcc
atcgacatcttctcctcttggcagtctccagaattcatcgagtatctggaacacacctcg
ccgtacttcgtgatgctgcatgatggtgcacaggcagatgagaaggcagtcgaagatgca
cacgcaaaccgtccctggagcccagaccgcatcgcgcttcgccgaatgatcggcgcattc
gtggaacgcggcttcaatatcgccctcgtcaacggcctcgaatggcgcgacacgaaagtc
atgaccgacgtgttggagtcgaggagacgcacaggcaaggctgatgagtcgccacattcc
ccaccgcaactctctttgccgcccacgcttgatgtctccgagtatgcgagcaagctaccc
tcggctctcacgcagcgtcaacgactcgctattctcacacttgctgtcatatctcgctca
cgtcagagctcgggagcgacagcgcgattgagtgctgccttcctgctacacctggccttg
ctcgcccacacgcccttatcagcacgtcgtgtgcacgtttccaagcctgacgaagagaca
acactgttcatcgatacactctcttccacagcagagtcgatcttgaacagtgcggcctgg
cctgaagcgactgcacatgatgatgccgacagcgatctgctcgatctcattgacggccga
ctgtttttgatcgttgccgcgacgaagccgagcgtctcttccgaagtgaaggccactttc
gacaagctcttgagcgctttacaagctgtttccgacgcaagcgagctggatcctagtaca
gctgtggagcggtcgacagagtccacgagagagtctccatcgccagcgacagcaaagagc
actgtcagagtcttacctttctcgaacaaggtattcgaccagcacttggagtcagtccaa
ttgaagatcgactccggaccagagggccccaagactctagctgcacgcaagatattccgg
gaggtgacgcactggcacaacgcgaagaagccactcgtacaaaagagtgtcactgctccc
aacactgtgcaagaagccaggaagaaggcacgagaggacaaacgcaaccagctcttcatg
gccgagatgaggacatacgcagcatcgctcacaaacgccattggcaagtctctggaacca
gagaccgtcattgtcggggtgccgaagcaaaacaccatcagatctgcgacagagtcacca
gctgagtcagatatgtccgacagtggcagttccgcaaaaggcaagggcaagccgggcaag
aagggcggcggtggcaagactgcggcgaagaatgctggcaagcaggcgatgctcaataat
atcgccgctgccaaagccaaaaaggacgagggcacaggcgacaaaattcatggcgcctgg
aaggtggcgtgtcaaggcttcgaggcagaccgggacccacgagctcgatatcgcaaagcc
aagcagtatctcgcaaacatccagcccgcgtggcgagagatcttcggaacagagggcgag
ctgtatctcgtcaactgcctcctgctgttctggattgatgcttgccgacgcaaagagcag
ccgggccgacagcaggttgcagcactgatctggaaccacgccaaggtcattgctcagcag
tcgcccctgaccaagtccattttcaagtgcgtggagctaaccgagaacactttgaagctg
ccgccattgcctgcatactccgcttccccggtggatcgaaagttggcgttcgatttcgca
ttgcctgcgaaagcagagtcgctggccatttcccttccatcgacggaattccaactgctc
gaatgcggaccatacctggagcgtagtttcgattccaagcctgatcctcgtgtggacttc
aagccagacggctggcagaggaaggtcctcgacacgatcgatgctgagaagagtgccttt
gtggttgcgccaacatctgccggaaagacattcatttctttctacgccatgcggaaggtt
ctggaggccgacgacgatggtgtgcttgtttacgttgccccgacaaaagctctcgtgaac
caaatcgctgctgaggttcaagcgcgatactcgaagaaattcaagtatggtggcaagtcg
gtctgggctatccatacacgagactaccgcatcaacaatcccacaggatgtcaggtcctg
gtcaccgtccctcacgtgcttcaaatcatgcttttggcaccatcgcatgccaactcatgg
tcgagtagagtcaagcgcatcatttttgacgagatccactccatcggtcaagccgaagac
ggggttgtttgggagcagttgctcctgatggcgccctgcccaatcattgccctctcagcg
accgttggcaatccgcaggaatttagcgactggctggcgaccacccaacaggcaattggc
aaggagcttgtcacggttcagcatccacaccgatactcagaccttcgcaagtacttctac
gtgccaccaaagaaattcggcttccatggtctcccggataagaaagccttcggatctctt
ggtcttgaaggcttgacggggttcaactttgttcacccggtagcaggtctgattgacaag
tctcgcggcattccggaggatctggcactggagccccgcgactgcttcaccttgtggaaa
gccatgactgaagtgcagacgaaggagcaccctgttccttcagatctcaaccccagcaaa
gtcctgccggagataatcaagaaggtagacatcttggcgtgggagaaagatctcaaagcc
attctccgcgcttggctgatggataagacgtcaccatacgatcaactactgcaaaagctc
gagcgaagcttccgcgctgacaagcgagaggaattgtatcgcacttccgaggacaaacag
aaagccatactcaaggtggagtccgtcaagacctcgaccctgccacttctctgccgattg
cacgaacaagatgctctgcctgcaatcctgtttaactacgatcgtcttcagtgcgaggac
atctgtcgatctgtcgtggaacaacttcagcgtgctgagctgaagcaagtcaagagtggt
aaatcctgggagcggacgttggagcgcttcgaggagtacaaaaagctgaaggctaagaac
aacgccaggacagccaaggccacatcgaagaagaccaagctgcaaggcgacgacgacgac
aagtcttcgaagatggatgagagtcgcgaaggtgatttttcctcgaaatgggaaggcttc
aatcccgatggtccagctgacggctatcacttcgcggactacaccaaggttctcatgtca
gagctcgacattttcttgcgacaacttcgcaagcgagaaattgcagagtggctgattgat
gctctggctagaggcgttggtgtgcatcacgcgggtatgaatcgcaagtatcgccaggtg
gtcgagattctcttccgcaagggcttcctgcgcgtgatcatcgcaacaggaacgttggct
cttggtatcaacatgccctgcaagactgtggtcttctctagcgactcagtcttcttgacg
gctctcaactatcgccaatgtgctggtcgcgctgggcgtcgtggcttcgacttgctcgga
aatgtcgtcttccagggtgtgtctaggcagaaggtctgcagactcctcagctccagactt
cctgatctcaacggtcacttcccaatcacgactacgctggtattgcgactcttttccctc
cttcacgagtcaaaaggagcgaagtatgctgtcaatgcgatcaatgctctcttgtctcaa
cccaggctatacatgggcggcgcttccttcaaggaccagacaatgcatcatctgcgattc
tccatcgagtacctgcgtcgacagcacttgttgggctctgatggtgcgccgctgaacttt
gctggcctggtgtcgcacttgtactttacggagaactcgtcattcgcattccacgcgctt
ctcaaggaaggctactttcatgagctctgcgctaatatcaacaagaacgagaaggatact
ctggaaacgttgatgatgatcctctcccatctgttcagccgcatcaagtgccgtcaagca
gataaagagttccgagaaaaggtgatcaagccatcatcatccatggtcttcctacctcca
atgccggaaagcgccagcaacatcctgctcgagcacaataagcagactctcgacgtctac
cgagcgtatgtggagaccttcgttgaccagcatatcaaagacgcagaccgcactctgcct
ctcactggccttcaagcaggagccgaaggtccgattccgagtggcatcaacagtctccca
ccatctcgcatccgctcctcattcgttgctctctctggcgcagatgatacctttgacaat
attcacgacctctgccagaccgttcgagacggtgtcttcctcgaagaagccgtgattcca
cacatgaacgtttacccggaggagatgtcagtccctctcaacgcctacctcctcgatttc
ttcaagcatggtgacgtccacaccatcgaaaaggccaacggcatccgccgatcagaaatc
tggttcctcctcaacgacttctccctcgtcctggccacaatcatcacttccctcatgaac
ttcatgaaactcaccgagtccaccgatctcgacatgctcgaagtgatgggcaacatggac
gctcacgaggaggccgaagacgacaaagtcgccgccactgagtcccaatccgaggcttcc
ggccccagcatcgcagacagcggtatcgccatgactgatcgcacgaagccgaccaagtct
gctgctcccacccagaagcaatctaggaatgcggagagctgggaggatctcatgggtagt
gagagcgaggaggatgaggatgtcgagcagaaggctgttgaagaggtggcggaggaactt
gcggcgtcgtgggatggcgagggaggtgaggggttgaaggatgttttgaaggcttttcaa
aagttgcatgctgagttcaccgtcaagttccgggctatgtgggcttga
DBGET
integrated database retrieval system
