Pseudocercospora fijiensis: MYCFIDRAFT_42306
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Entry
MYCFIDRAFT_42306 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03013
Nucleocytoplasmic transport
pfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCFIDRAFT_42306
09122 Translation
03013 Nucleocytoplasmic transport
MYCFIDRAFT_42306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfj03019
]
MYCFIDRAFT_42306
03041 Spliceosome [BR:
pfj03041
]
MYCFIDRAFT_42306
Messenger RNA biogenesis [BR:
pfj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
MYCFIDRAFT_42306
Spliceosome [BR:
pfj03041
]
Complex C
Other components
EJC/TREX
MYCFIDRAFT_42306
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MYCFIDRAFT_42306
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
19339472
NCBI-ProteinID:
XP_007931976
JGI:
42306
UniProt:
M3AIW7
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MAVASAAELEPVARVATRVKALLQHARSTKPETTIEPPLNATHLIEDIQALHDVFDGAYD
QSYRFSAVETAFREIFYSLIHSTEIHDPAFGEVWNLLDVVLICGDEGRCDPGLVCWLIEE
LLDSQTTEGCRTVFDYLDSRRESRAEDAIFCGRVFFFLFQTFPLGDKSSVNLRGEFHTEN
TTKFEVSAPVEGEQMDVDFKTGETPSDTKESTPQPAAPTKPGSKAIPIKAAPKKVAEEEV
LSTEQLYPIFWRLQHDFSDPTRLFDNDNFTVFKKGLACTIAKFKKTPTVVQTKSSVEGRR
GTKRKMHGDGGEEESDNTLVDNYNPKYLTSRDLFGLELSDLAFQRHILVQALILIDFLLS
LTEKAKKRLNAVSTNRALIHAFVLNEEDAKWATSTRSTITSHLNMSNEGRHYCRMVETVL
ARDKNWVRWKVESCPSIVRGPVSTEEELLARTGAAKFTRPRTIPDKPQNVMNLSFLDEVT
GGGLDALKHPSRYTAPSIEQLVEQVKTDKLDAEMAMDEEEKSSYENAIQNAKWRALRQAR
ATNLSLLDKVESTKDLEEIMSPPEQATENVEATENTGEDTNAPVLTIAAEEAEEATAVET
EPVAVVSERESDKVMAEAEAA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggcatctgctgcagagctggagccagtggcacgggtggcaacaagagtcaag
gctctgctccaacatgcccgaagcacaaaaccagagacaacaatcgagcctcctctcaac
gctacacacctaatcgaagacatccaagcgctacatgatgtctttgacggcgcatacgat
cagtcgtatcgtttctctgctgtagagacagcattcagagagatattttattctctcata
cattctaccgaaatccacgatccggcttttggagaagtctggaacttgctggacgtggtt
ctaatatgtggcgatgaaggccgatgcgaccctggactagtatgctggctgatcgaggag
cttttggacagccaaacaacggaaggatgccgaactgtcttcgactacctggactcgcga
cgagagagtcgtgcagaagatgcgatcttttgtggtcgagttttctttttcctgtttcag
acatttcccttgggagacaaaagctccgtcaacctgcgaggagagtttcacacggagaac
acgacgaagtttgaagtatcagcgcccgtagaaggagaacagatggacgtcgatttcaaa
accggagaaacaccaagcgacacaaaagaaagcaccccacaacctgccgctccgacaaaa
cctgggagcaaggcgatcccgataaaggcagctccgaagaaggtagctgaagaagaggtg
ttgtccacggagcagttatacccaattttctggcgattgcagcacgacttttccgatccg
acgagactttttgacaacgacaatttcacggtcttcaagaaggggctggcgtgcacgatt
gccaagttcaagaaaactcccacggtggttcagacaaagtccagtgtagagggtaggcgc
ggtaccaaacgcaagatgcacggcgatgggggcgaagaagagagcgacaatactctcgtt
gacaactacaatcccaaatacctcaccagccgtgatctttttggcctggagcttagcgat
cttgcctttcagcgtcacattctcgttcaagctctaattctgatcgactttctactatcg
ttgacggaaaaggcgaagaagcgtctaaatgctgtctcgaccaacagggctttgatccac
gcctttgtcctgaatgaggaagacgcgaagtgggcaacgtctacgcgatcaaccatcaca
tctcacctcaacatgtcgaacgaaggccgccattactgtcgtatggtggagaccgtgctg
gcgcgagacaagaactgggtgcggtggaaagtggaaagctgtccatcgattgtccgcgga
cctgtatcgacagaagaagagttgctcgcgaggactggagcggcgaagtttacacgtcca
cgtaccatccccgacaagccgcaaaacgtgatgaacctcagcttccttgatgaggtcaca
ggcggtggtctggacgccctgaagcatccttctcgatacaccgcgccgtcgatcgagcaa
ttggtggagcaagtcaagaccgacaaactcgatgcagaaatggcgatggacgaggaagag
aagagcagttacgaaaacgctattcaaaacgcgaaatggcgggctttgcgtcaagctcga
gccacgaatttgagcttactggataaagtcgagagcactaaagatttggaagagatcatg
agtcctcctgagcaagctactgaaaatgttgaggccactgagaacactggtgaagatacc
aacgctcctgtattaaccattgcggctgaggaagcggaggaagcaacggctgttgagact
gagcctgttgcagtggtatcagaaagggaaagcgacaaggttatggcagaggcggaggcg
gcatga
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integrated database retrieval system
