Pseudocercospora fijiensis: MYCFIDRAFT_81140
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Entry
MYCFIDRAFT_81140 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCFIDRAFT_81140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfj03041
]
MYCFIDRAFT_81140
Enzymes [BR:
pfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCFIDRAFT_81140
Spliceosome [BR:
pfj03041
]
Complex C
Other components
Step II factors
MYCFIDRAFT_81140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
SRP54
AAA_19
T2SSE
AAA_30
nSTAND3
ATPase
SLFN-g3_helicase
Microtub_bd
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
19341801
NCBI-ProteinID:
XP_007930319
JGI:
81140
UniProt:
M3A4X4
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MASEHSAKRRRIDYDDHRDSEHFAAQPARRQHHRNRNHPSKNGDSARPKQHEFDGPEAGV
DSENAAALDRDWYTYGEDGAVLGDDAHNPFGGEDTTWADRERERELLERKMAVRSRQNPK
FIQRQKDNDAWEANRMLASSVAQTRADYALDDENEDIRIHLLVHDIKPPFLDGKTVFTKQ
LEPVSAVKDPQSDMAVFAKKGSKVVRERRQQKERQKQAQEATSLANTALGNVMGVKEEDT
DSAAPAGAEEAEATSKGSKFADHMKKQEKDSGQSEFSRSKSLREQREYLPAFAVREELLR
VIRDNQVIIVVGQTGSGKTTQLTQFLYEDGYAKSGMIGCTQPRRVAAMSVAKRVAEEMEV
PLGGTVGYAIRFEDCTSKDTSIKYMTDGVLLRESLNEPDLDRYSCIIMDEAHERALNTDV
LMGLIKKVLTRRRDLKLIVTSATMNAERFSRFYGGAPEFFIPGRTFPVDIQYSRSPCEDY
VDSAVRQVLAIHVSQGQGDILVFMTGQEDIEVTCELVAERLAQLNDPPPLSILPIYSQMP
ADLQAKIFDRAAPGVRKVIVATNIAETSLTVDGIMYVVDCGFSKLKVYNPRIGMDTLQIT
PVSQANASQRAGRAGRTGPGRAFHLYTERAFKEEFYVATIPEIQRTNLANTVLLLKSLGV
KDLLDFDFMDPPPQDTITTSLFDLWALGALTNLGELTELGRLMTSFPMDPSLAKLVITSS
TTYSCAEEMITIVSMLSVPSVFYRPKERLEEADAAREKFFVHDSDHLTLLTVYQQWVANG
CRDRWCVQHFLHPKALRRAQEIRQQIADIMTSHKMEITSCGYDLDVVRECICSGYYHQAA
KRKGLGEYVNLRTSVTMSLHPTSALYNSGDPPDYVVYHELILTSKEYMSVATAVDAHWLA
DLGGVFYSVKEKGYSAIQGKREIEYSKKADLELQIERDRAAQKQAAEAELNGGRGEVKKG
GAAKPHSAPAKKGSAVVKPTIGRRR
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgagcatagcgccaagcgacgacgaatcgactacgacgaccatcgcgactcg
gagcatttcgcagcacagccagcccgccgccagcaccatcgcaatcgaaatcatccctcc
aaaaatggcgactccgcaaggcctaagcaacacgagttcgatggcccggaagcgggcgtc
gacagcgaaaacgcagccgccctagatcgcgactggtatacatacggggaagatggagca
gtgttaggtgacgacgcacataaccctttcggcggcgaggataccacatgggcagatcgg
gaaagagaacgagagcttctggagaggaagatggctgtgcgctccaggcaaaatccaaag
ttcattcaacgccagaaggacaacgatgcgtgggaagcgaatcgcatgctcgcctcgagc
gttgcccagactcgagccgactatgccttggatgacgaaaatgaggatatccggatccat
ctattggtacacgatatcaagccgccatttctcgacggcaagaccgtatttacgaagcaa
ttagagcctgtcagtgctgtcaaagacccgcaaagcgacatggccgtatttgccaagaaa
ggaagcaaagtggtcagagaaagacggcaacagaaggagcgacagaagcaagcacaggaa
gctacgagtctggccaataccgccctcggcaatgtgatgggcgtcaaagaggaagacact
gactctgctgccccagctggtgctgaggaagcggaagcgacgtccaagggctcaaaattc
gctgatcatatgaagaagcaggagaaggattctggacagtcggagttctcacggtccaag
tcgctacgggagcaacgagagtacctcccggcctttgcagttcgagaagagctattgagg
gtgatcagggataatcaggtcatcattgtggtcggtcagaccggaagcggcaagaccact
cagctcactcagttcctgtatgaagatggctatgcgaagagcggcatgattggctgcacg
caaccaagacgtgtggcagccatgtccgtggccaagcgtgtcgcggaagagatggaggta
cctctgggaggcaccgttggctatgctattcgatttgaggattgcacgagcaaagacacc
tcaatcaagtacatgacggatggtgtgcttctgcgagaatcgctcaacgaacccgacctg
gaccgctacagctgcataattatggatgaggcgcatgaaagagccctcaacaccgatgtt
ctcatgggcctcatcaagaaagtgctcactcgccggcgagatctgaagctcatcgtgacc
tcggcgacaatgaacgccgaacgattctctcgcttttatggcggtgcgccagaattcttc
attccaggccgcacctttccagtcgacatacaatattcgagatcaccatgcgaagactac
gtggacagtgcagtgcgtcaagtcctggcaattcatgtcagccagggacaaggcgatatc
ctcgttttcatgaccggacaagaagacatcgaggtcacctgtgagctggtcgcggaacga
cttgcgcagctcaatgatcctccgccactcagcattctgcccatctactcgcaaatgccg
gccgaccttcaagcaaagatcttcgaccgggcagccccgggcgtgcgcaaggtcattgtc
gccaccaatattgcggaaacgtcgctcacagtcgatggaatcatgtatgtggtagactgc
ggcttcagcaaactcaaggtctacaacccgcgcataggcatggacacgctccaaatcaca
cctgtcagccaagcgaacgcatcgcagcgcgcaggtcgagcgggccgtaccgggcctgga
agggcattccatctctacaccgaacgagctttcaaagaagaattctatgttgctacgatt
cctgaaatccaacgcaccaacctggccaatactgtacttctactcaagtcgcttggtgtc
aaagaccttctggacttcgacttcatggatccacctccacaagacactatcacgacgtct
ctcttcgatctgtgggctctcggggcgctcacaaatctaggggagctcacagaactcggt
cgactgatgacttcctttcctatggacccgtcccttgccaagctggtgatcacctcgagt
acaacttactcctgtgctgaggagatgattacgatcgttagcatgctatcggtgccctca
gtcttctatcgacctaaagagcgactcgaagaagccgatgctgcgcgtgagaagttcttc
gttcacgactcagatcacctcaccctgctcacagtatatcagcaatgggtcgctaatggc
tgccgtgatcgatggtgtgtccaacactttcttcaccccaaggcactccgccgagcccag
gagattcgtcagcaaatcgccgacatcatgacttcccacaaaatggagataacctcttgt
ggctacgatctcgatgtcgtgagggaatgcatctgctctggatattatcaccaagcggca
aagagaaaaggtctgggtgaatatgtgaacctgcgcacaagtgttaccatgtcacttcac
ccgacctcagctctatataactcaggtgatccaccagactatgtagtctaccacgagctg
attctcacctcgaaggaatatatgagtgtcgcgactgcggtagacgctcattggctggcg
gacttgggcggagttttctatagtgtgaaggagaagggttattccgctattcaagggaag
agagaaattgaatactcgaagaaagcggacttggagctgcaaatcgagagggatagggcc
gcacagaagcaggcagctgaggcggagctgaatggtgggcgaggtgaggtgaagaagggt
ggtgccgcgaaacctcactcggcgccggctaagaagggcagtgctgttgtgaagccgacg
ataggtaggagacgatag
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