Pseudomonas frederiksbergensis: PFAS1_21010
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Entry
PFAS1_21010 CDS
T04786
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFAS1_21010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_21010
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFAS1_21010
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFAS1_21010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APV41712
UniProt:
A0A1H4YZM0
LinkDB
All DBs
Position
complement(4530064..4533513)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRISALYRLPELSHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPF
RIDLFDDEIETLRTFDPENQRSIDKVETVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDDTSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPARELPNL
AIEAKATQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDSQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLMRITALKLQAELLGIKKV
DGGPQGGRIEFAAQTPVDPLTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FEHLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctcgccattgccgaggccgccagcgctgccaagcgcttc
accctgctgctgaccgccgacagccaaagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgccggtgctgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccgcaccaggacattatttcccagcgcatctccgcgttgtatcggttgccggag
ctgagtcatggcgttctggtcgtaccgatcaccacggccctgcatcgcctggcgccgacc
aaattcctgctcggcagcagcctggtgctcgacatcggtcagaaactcgatgtcgagcag
atgcgcacccggcttgaggccagcggctatcgatacgtcgataccgtctacgagcatggc
gaatttaccgtgcgcggctcgttgatcgatctgttcccgatgggcagcaaactgcctttc
cgcatcgacctgttcgacgacgaaatcgagacccttcgaaccttcgatccggaaaaccag
cgctccatcgacaaggttgaaacggttcgcctcctgccagcgagagaatttccgctgcaa
aaggatgcggtcacccgcttcaaggcgcgcttccgtgagcgtttcgatgtcgatttccgc
cgctgcccgatcttccaggacttgagcagcgggattacaccggccggtatcgagtactac
ctgccgctgttcttcgacgacacttccacgctgttcgattacctgccccaagacacgcaa
gtgttttccttgccgggtatcgagcaggcggcggaaaacttctggaacgacgtgcgcaat
cgctatgaagagcgtcgcgtcgatccggcccgtcctttattgccgcccgccgagttgttc
ctgccggtggaagattgcttcgcgcgcctgaaaaactggccgcgcgtggttgccagtcaa
caggacgtggaaaccggcgtcggccgcgagcggttccccgctcgagagctgccgaacctg
gccatcgaagccaaggccacccaaccgttggcggcgctggcgggtttcctcgacgaattt
cccggtcgcgtgctgtttaccgccgaatccgcgggccgtcgtgaagtgctgctggaattg
ctcgaacgcctgaagctgcggccgaaaaccgtcgacagctggccggatttcgtcgcgagc
aaagaacgcctggcgatcaccatcgcgccgctcgacgaaggtctggtgctcgatgacccg
gcgctggccctggtcgccgaaagcccgttgttcggtcagcgcgtgatgcaacgccgtcgc
cgcgagaaacgcgccgacgccaacaatgatgccgtaatcaaaaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgatcacggcgtcggtcgctatctcgggctgacaatc
ctggaaatcgacagtcaggccgctgagttcctgaccctcgaatacgccgaaaacgccaag
ctgtacgtgccggtggccaatctgcatctgatcgcccgatacaccggcagcgacgatgcc
ctggccccgctgcaccgcctcggctccgagacctggcagaaagccaaacgcaaagccgcc
gaacaggtgcgcgacgtggccgccgagttgctcgacatctatgcccgccgcgccgctcgc
gaaggttatgccttcgccgacccgaaagccgattacgcgaccttcagcgccggcttcccg
ttcgaagaaaccccggaccagcaaaccaccatcgacgccgtgcgcgccgacatgctcgcg
ccgaaaccgatggaccgcctggtctgcggcgacgttggcttcggcaagaccgaagtggcg
atgcgcgccgcgttcatcgcggtacacggcggtcgtcaggtggcgattctggtaccgacc
accctgctcgcccagcaacactacaacagcttccgcgaccgcttcgccgattggccggtg
agcgtggaagtgatgagccgcttcaaatcgaccaaagaagtgaatgcggcggtcgcggac
ctggccgaaggcaagatcgacatcgtcatcggcacacacaagctgctgcaggatgacgtg
aaaatcaaaaacctggggctggtgatcatcgacgaagagcaccgatttggggtccgccag
aaggaacagctcaaggccctgcgcagtgaagtcgatatcctgaccctgactgccacgccg
attccgcgcacgctgaacatggccgtgtcgggcatgcgcgatctgtcgatcatcgccacg
ccgccggcccgtcgcctgtcggtacgcacgttcgtcatggagcagaacaagagcacggtc
aaagaggccttgctccgtgagctgttgcgtggcggtcaggtctactacctgcacaatgat
gtgaaaaccattgagaaatgcgccgccgacctcgccgaactggtgccggaagcacggatc
ggcatcggccacgggcagatgcgcgaacgcgatctcgaacaagtaatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcattgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcagctgcaccag
ttgcgcggccgggtcggtcgcagtcaccaccaggcttacgcttatttgctgacgccgccg
cgccagcaaatcacgcctgacgccgaaaaacgtctggaagcgatcgccaatacccaggac
ctcggcgcgggcttcgtgctcgccaccaacgacctggaaatccgtggtgccggcgaattg
ctcggcgatgggcagagcggacagatccaggctgtcggtttcaccctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacaaccgaacctcgaccagccgctc
ggcggtggtccggaagtcaatctgcgggtaccggcgttgattcccgaggactatctgcca
gacgtacacgcccgactgattctctacaaacgcatcgcctcggccaccgacgaggaaggc
ctcaaggacttgcaggtggagatgatcgatcgtttcggtctgctgccggagccgaccaag
aacctgatgcgcattaccgcgctgaaattgcaggccgagctactgggcatcaagaaagtc
gacggcggcccgcaaggtggccgaatcgagttcgcggcgcaaacaccggtcgacccgctg
acgctgatcaagttgatccagagccagccaaaacgctacaaattcgaaggcgccacgatg
tttaaattccaggtgccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
tttgagcacctcattccgaaaactgcttga
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