Pseudomonas protegens Pf-5: PFL_1940
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Entry
PFL_1940 CDS
T00249
Symbol
fadB
Name
(GenBank) fatty oxidation complex, alpha subunit
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00071
Fatty acid degradation
pfl00280
Valine, leucine and isoleucine degradation
pfl00310
Lysine degradation
pfl00362
Benzoate degradation
pfl00380
Tryptophan metabolism
pfl00410
beta-Alanine metabolism
pfl00640
Propanoate metabolism
pfl00650
Butanoate metabolism
pfl00907
Pinene, camphor and geraniol degradation
pfl00930
Caprolactam degradation
pfl01100
Metabolic pathways
pfl01110
Biosynthesis of secondary metabolites
pfl01120
Microbial metabolism in diverse environments
pfl01200
Carbon metabolism
pfl01212
Fatty acid metabolism
Module
pfl_M00087
beta-Oxidation
pfl_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
PFL_1940 (fadB)
00650 Butanoate metabolism
PFL_1940 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
PFL_1940 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
PFL_1940 (fadB)
00310 Lysine degradation
PFL_1940 (fadB)
00380 Tryptophan metabolism
PFL_1940 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
PFL_1940 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
PFL_1940 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
PFL_1940 (fadB)
00930 Caprolactam degradation
PFL_1940 (fadB)
Enzymes [BR:
pfl01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
PFL_1940 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
PFL_1940 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
PFL_1940 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
PFL_1940 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
DUF6383
Motif
Other DBs
NCBI-ProteinID:
AAY91227
UniProt:
Q4KFC4
LinkDB
All DBs
Position
2165628..2167775
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELNFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADYRVMAASAKIGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENRAEDAL
KVGAVDAVVAPDKLKDAALALVKRAISGEFDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQIVLAEVEGQVK
EDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKIMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDVLYEAKRLGQKNGKGFYAYETDKKGKQ
KKVADPSVLEVLKPIVYEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGALYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaattg
aatttcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaacgaattg
cgtcaggctgttgacaccatcaaggcagatgcttcgatcaagggcgtgatcgtcagcagc
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagtttgtcgacaacttcaagctg
ccggatgccgagctggtggcaggcaacctcgaagccaacaagatcttcagcgatttcgaa
gacctcaacgtgccaaccgttgccgcgatcaacggcatcgccctgggcggcggcctggaa
atgtgcctggcggcggactaccgcgtcatggctgccagtgccaagatcggcctgccggaa
gtcaagctgggcatctacccgggcttcggcggtaccgtgcgcctgccgcgtctgatcggt
gccgacaacgccatcgagtggattgccgccggcaaggaaaaccgtgctgaagacgcgctg
aaagtcggtgccgtcgacgccgtggttgctcccgacaaactcaaggacgccgctctggcc
ctggtcaagcgcgccatttccggcgagttcgactacaaggccaagcgccagcctaagctg
gaaaagctcaagctcaacgccattgagcagatgatggctttcgaaaccgccaaaggtttc
gtggccggccaggctggcccgaactacccggcaccggtcgaagcgatcaagaccattcag
aaagccgccaacttcggtcgcgacaaagccttggaagtagaggctgccggcttcgtcaaa
ctggccaagacctctgctgcgcaaagcctgatcggcctgttcctgaacgatcaggaactg
aagaaaaaggccaaggcctacgacgaaatcgccaaggacgtgaagcaggccgccgtactc
ggcgccggtatcatgggtggcggcatcgcctaccagtcggcctccaaaggtacgccgatc
ctgatgaaggacatcaacgaacacggcatcgagcaggggctggcggaagccgcaaaactg
ctggtgggccgtgttgacaaaggccgcatgaccgccgcgaagatggctgaagtgctcaac
ggcattcgtccgaccctgtcctacggtgacttcggcaacgtcgacctggtggttgaagcc
gtggtcgagaaccccaaggtcaagcagatcgtactggctgaagtggaaggccaggtcaag
gaggacaccatcctggcgtccaacacctcgaccatttccatcagcctgctggccaaggct
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggcgagaagtccagcgagctggccgttgccaccaccgttgcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggctttttggtc
aaccgcgtgctgttcccgtacttcggcggtttcgccaagctggtcagcgccggtgtggac
ttcgtgcgcatcgacaagatcatggagaaattcggctggccaatgggcccggcgtacctg
atggacgtggtcggcatcgacaccggccaccacggtcgcgacgtcatggccgaaggcttc
ccggatcgcatgaaggacgatcgccgctcggccgtggacgtgctctacgaagccaagcgc
ctgggccagaagaacggcaagggcttctacgcctacgaaaccgacaagaagggcaagcag
aagaaggtggccgatccgtcggtgctggaagtgctcaagccgattgtctacgagcagcgt
gaagtcaccgacgaagacatcatcaactggatgatgatcccgttgtgcctggaaaccgtt
cgttgcctggaagacggcatcgttgaaaccgctgccgaagctgacatgggcctggtctac
ggcattggtttccctccattccgtggcggtgcgctgcgctacatcgattccatcggtgtt
gccgagttcgttgccctggccgaccagtacgccgatctgggcgcgctgtaccacccgacc
gcgaagctgcgtgaaatggccaagaacggccagagcttcttcggttaa
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