Pseudomonas protegens Pf-5: PFL_1942
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Entry
PFL_1942 CDS
T00249
Symbol
topA_1
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_1942 (topA_1)
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_1942 (topA_1)
Enzymes [BR:
pfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFL_1942 (topA_1)
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Topoisomerases
PFL_1942 (topA_1)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFL_1942 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AAY91229
UniProt:
Q4KFC2
LinkDB
All DBs
Position
2169429..2172041
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AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGSN
VRFEVARENGEAFKPLNEAQAMAALEKLKASAYSVAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGNKYLPASPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVMPQMAKPGDDDVLPEMAQGEVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAEGAESGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLELIPHKDEIDPKYHFLCEAPQKDPDGRPAVVRYSRKTK
EQYVQTEVDGKPTGWRAFYDGGKWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggcaagtgccgccaaggagccagccgccaagcgtggcaaggccgctgcgggcgaa
gccccggctctgtcgccgaaggaaaaggctcgcaagcagctggtgtcgcgcatgggcgtc
gatcccgagcacggctggaaagccaagtacgaaatcctccctggcaaggaaaaggtcatc
gaagagctgcgccgccttgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccatcggcggtgatgacagccgc
tacaaacgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctcccag
ccgggcgagctggacattgatcgagtcaatgcccagcaggcgcgacgcttcctcgaccgc
gtggtgggctacatggtttcgccgctgctgtgggcgaagattgcccgtggcctgtctgcc
ggtcgcgtgcagtcggtagccgtgaagctggtggtggagcgcgagcgtgagattcgtgcc
ttcatcccggaagaatactgggaagtacacgctgacctgggcactgccaagggctcgaat
gtgcgttttgaagtggcccgtgaaaacggcgaagccttcaaaccgctcaacgaagcacag
gccatggccgccctggagaagctcaaggcctcggcctacagcgtcgccaagcgtgaagac
aagcccaccagcagcaagccatcggcgccgttcatcacctccaccctgcagcaggctgcg
agcaatcgcctgggcttcggcgtgaagaagaccatgatgatggcccagcgtctgtatgaa
gccggctacatcacctatatgcgtaccgactccaccaacctctcggccgatgccgtggcg
atggcgcgtacctatatcgaagacgagttcggcaacaagtacctgccggcttcgcccaat
gtctacagcagcaaggaaggggcccaggaggcgcacgaggcgattcgtccgtccgatgtg
aacacccacccaagcaagctgtcgggcatggaacgtgacgctgagcgcctctacgagctg
atctggcgccagttcgtcgcctgccagatgctgccggcgcaatacctgtccaccaccgtc
agcgtcgccgctggcgacttcgagctgcgtgccaagggccgcatcctcaagtttgacggt
tacacccgggtcatgccgcagatggccaagccgggcgatgacgatgtgctgccggaaatg
gcccagggcgaagtgctaaagctgatcaagctcgatccgagccagcacttcaccaagcca
ccggcgcgttactccgaagccagcctggtgaaggaaatggaaaagcgcggcattggtcgt
ccttcgacctatgcggcaatcatttcgaccatccaggatcgcggctatgtgaccctgcac
aaccgtcgtttttattcggaaaagatgggcgacatcgtcactgagcgcctttccgagagc
ttctccaaccttatggactacggcttcaccgccggcatggaagagaatctcgatgacgtg
gcccagggcgagcgcgactggaagaacgtcctcgacgaattctacggcgacttcaagaag
aagctcgaagtggccgagggcgccgaaagcggcatgcgcgccaaccagccggtaatgacc
gatatcccatgccagacctgcggccggccgatgcagatccgtaccgcctccactggcgtg
ttcctcggctgctcgggctacagcctgccacccaaggagcgttgcaaggccaccgtcaac
ctggtgccgggcgacgagatcgccgcggatgacgaaggcgagtccgaatccctggtgctg
cgcggcaagcatcgttgcccgatctgcagtacggcgatggatgcctacctgctggacgaa
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggctacgagatcgaagag
ggcagctaccggatcaaggggtatgaaggcccgagcctggagtgtgataagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacactcgcaagctgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcccgagctcaagtgcgagaaggtcaacgacacctacatcctgcgcgatggcgct
tcgggcctgttcctggcggccagtcagttcccgaaaaaccgcgagacccgtgcgccgttg
gtgctggaactgatcccgcacaaggatgagatcgatcccaagtaccacttcctctgcgaa
gctccgcagaaggacccggacggccgccctgcggtggtgcgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtcgacggcaagccgaccggctggcgtgccttctacgac
ggcggtaaatggaaggtcgaagacaagcgctaa
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