Pseudomonas protegens Pf-5: PFL_1954
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Entry
PFL_1954 CDS
T00249
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFL_1954 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_1954 (mfd)
Enzymes [BR:
pfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFL_1954 (mfd)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFL_1954 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAY91241
UniProt:
Q4KFB0
LinkDB
All DBs
Position
complement(2182453..2185902)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIETGVGRERFPAHELPNL
AIEAKANQPLAALSGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSGKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLIRLTLLKLQAEQLGIKKV
DGGPQGGRIEFAADTPVDPLALIKLIQGQPKRYKFEGATLFKFMVPMERPEERFNTLEAL
FERLTPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgctactccctgccgccgccggcaaacagcattggggcaac
ttgcccggtgccgccctgagcctggccatcgccgaagccgccagcgctgccaagcgcttc
accctcctgctgactgccgacagccaaagcgctgaccggctggaacaggagctgagcttc
ttcgccccggatctgccggtgctgcattttcctgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctatcggctgccggag
ctggagcatggcgtgctggtggtgccgatcaccactgccctgcaccgcctggcgcccacc
cagttcctgctgggcagcagcctggtgctggacgtcggccagaagctcgatgtggaacag
atgcgcacccgcctggaagccagtggttaccgctacgtggacaccgtctacgaacacggc
gaattcaccgtgcgcggcgcactgatcgatctgtttcccatgggcagcaagctgccctat
cgcatcgacctgttcgacgacgaaatcgagaccctgcgcaccttcgatccggagaaccag
cgctccatcgacaaggtcgactcggtgcgcctgctgccggccaaggagttcccgctgcag
aaagaagcggtgacccgcttcaaggcgcgctttcgcgaacgcttcgatgtggacttccgc
cgctgcccgatcttccaggacctgagcagcgggattaccccggccggtatcgagtactac
ctgccgctgttcttcgaagagacctcgaccctgttcgactacctgccccaggacacccag
gtgttttccctgccgggcatcgaacaggccgcggaaaacttctggaacgatgtacgcaac
cgctatgaagagcgccgcgtcgacccttcgcgcccgctcctgcccccggccgaactgttc
ctgccagtggaagactgcttcgcccggctgaagaactggccgcgagtggtggccagccag
caggacatcgaaaccggtgtcggccgcgaacgcttcccggcccacgagctgccgaacctg
gccatcgaagccaaggccaaccagccgctggcagcactttcgggctttctcgacgagttc
cccgggcgagtgctgttcaccgccgaatccgccggccgccgggaagtgctgctggagctg
ctggagcgcctcaagctgcggcccaagaccgtcgacagctggccggacttcgtcgccagc
aaggaacgcctggcaatcaccatcgccccgttggacgaaggcctggtgctggacgatccg
gccctggccctggtggccgaaagcccattgttcggccagcgagtaatgcagcgtcggcgc
cgggaaaagcgcgccgatgccaacaacgacgcggtgatcaagaacctcaccgagctgcgt
gaaggtgcgccggtggtgcatatcgaccatggtgtcggtcgctacctgggcctggcgacc
ctggaaatcgacaaccaggccgccgagttcctgaccctggaatacgccgagggggccaag
ctttatgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctcgcgcccctgcatcgcctgggctcggaagcctggcagaaggccaagcgcaaggccgcc
gaacaggtgcgcgatgtggctgccgaactgctggacatctatgcccgccgcgccgcccgc
gaaggctatgcctttgctgacccgaaggccgactacgccaccttcagtgccggcttcccc
ttcgaggaaaccccggaccagcagagcaccatcgaagcggtgcgcgaggacatgctgtcg
ggcaagcccatggaccgcctggtatgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgcggccttcatcgcggtccacggcggcaagcaagtggcgatcctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtccaccaaggaagtgaatgctgcggtagccgac
ctcgccgaaggcaagatcgacatcgtcatcggcacccacaagctgttgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgacgaagaacaccgtttcggtgtccgccag
aaagagcagctcaaggcactgcgcagcgaagtcgacatcctgaccctgaccgccacgccg
atcccgcggaccctgaacatggccgtctcgggcatgcgcgatctgtcgatcatcgctacc
ccgccggcgcgacgcctgtcggtgcgcacctttgtcatggagcagaacaagagcacggtc
aaagaggccctgttgcgagaactgctgcgtggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctggccgaactggtacccgaggcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaagtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagttgcaccag
ttgcgcggtcgggtcgggcgcagccaccaccaggcctacgcatacctcttgacgccaccg
cgccagcagatcaccccggacgcggaaaaacgcctggaggccatcgccaacacccaggac
ctgggagccggcttcgtcctggccaccaacgacctggagatccgtggcgctggcgaactg
ctgggcgacggccagagcgggcagatccaggccgtgggcttcaccctctacatggaaatg
ctcgagcgcgcggtgaaggccatccgcaagggcgaacaaccgaacctcgaccagccactg
ggtggcggcccggaaatcaacctgcgcttgccggcactgattcccgaggactacctgccg
gacgtgcacgcgcgcctgatcctctacaagcgcatcgcttccgccaccgacgaggacggc
ctgaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctgatccgcctgaccctgctcaaactccaggccgagcaactggggatcaagaaggtc
gacggcggcccacaaggcggccgcatcgagttcgccgcagatacaccagtggacccactg
gccttgatcaaactgatccagggccagcccaaacgctacaaattcgaaggcgcaaccctg
ttcaagttcatggtgccgatggagcgcccggaagagcgctttaatacattggaggcactg
tttgagcgcctcaccccgaaatctgcttga
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integrated database retrieval system
