Phytohabitans flavus: Pflav_021830
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Entry
Pflav_021830 CDS
T06516
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pfla
Phytohabitans flavus
Pathway
pfla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pflav_021830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfla03400
]
Pflav_021830
Enzymes [BR:
pfla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pflav_021830
DNA repair and recombination proteins [BR:
pfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pflav_021830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BCB75773
UniProt:
A0A6F8XPM7
LinkDB
All DBs
Position
2419484..2420452
Genome browser
AA seq
322 aa
AA seq
DB search
MEVGSLPLLRPMLATLGELPSGGGWSYEFKWDGVRAIVYVERGEVRVLSRNDREIADSYP
ELRGLPKLLPPGPVVLDGEIVALDEAGAPNFSRLQQRMHVREPAPTLLRRVPVHLYAFDV
LHLGERSTVKQPYRERRELLDGLALQDDPVRTPPYWTDDRGGDLMAAAAEQGLEGVVAKR
LDSPYQPGLRSRLWIKTPRNATTEVVVCGWKAGEGRRSGAIGSLLLGAYDNADRLVYIGK
VGTGFTNKMLADLGKRLAPLHRHDPPFDGPVPRPDARDATWVEPRLVGDVAYRTLSPEGR
LRHPSWRGLRTDKEPREVRAEA
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgggtcgctcccgctgctgcgcccgatgctggcgacgctgggcgagctgccg
agcggcggcgggtggtcgtacgagttcaagtgggacggggtccgcgcgatcgtctacgtc
gagcgcggcgaggtacgtgtgctgtcccgcaacgaccgcgagatcgccgacagctatccc
gagctgcgcggcctgccgaagctgctgccgcccggcccggtggtgctggacggcgagatc
gtggcgctggacgaggcgggcgcgccgaacttcagccgcctccagcagcggatgcacgtc
cgcgagccggcgcccacgctgctgcggcgggtgccggtccacctgtacgcgttcgacgtg
ctccacctgggcgagcggtcgacggtcaagcagccgtaccgggagcgccgcgagctgctc
gacggcctggcgctccaggacgacccggtgcgcaccccgccgtactggaccgacgaccgc
ggcggcgacctgatggcggccgccgccgagcagggcctcgaaggcgtggtcgccaagcgc
ctggactcgccgtaccagcccggcctccgctcccgcctgtggatcaagaccccgcgcaac
gccaccaccgaggtcgtcgtctgcggctggaaggcgggcgagggccgccgctcgggcgcc
atcggctcactgctgctcggcgcgtacgacaacgcggaccggctcgtctacatcggcaag
gtcggcaccggcttcaccaacaagatgctcgccgacctcggcaagcggctcgccccgctg
caccgccacgacccgcccttcgacggcccggtgccccgcccggacgcccgggacgccacc
tgggtcgagccccgcctcgtgggcgacgtcgcgtaccgcacgctcagccccgagggccgc
ctccgccacccgtcctggcgtggcctgcgcaccgacaaggaaccccgcgaggtgcgcgcg
gaagcctga
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