Perca flavescens (yellow perch): 114550776
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Entry
114550776 CDS
T07494
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114550776 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114550776 (lig4)
Enzymes [BR:
pflv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114550776 (lig4)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114550776 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
114550776
NCBI-ProteinID:
XP_028427431
LinkDB
All DBs
Position
24:5732504..5738333
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AA seq
911 aa
AA seq
DB search
MEGTSKSDAAGQPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILKDFIESWRKFHSALHK
DNPKTTDSFYPAMRLLVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTGKGNLSIKEVNDFLDSVAINNAGKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAAMANIRSVEKQMGGSPFYIQTKLDGERIQLHKDGDVYKYFTRNA
FEYTQQFGGSPLEGSLTPYIHNNFKSHIVNCILDGEMMAYSPTTDTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRYETLQTVFSPVKGRIHLVPKTDARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKDWHQCMT
VAELDQFRGKASGKLASRHLRIDGDEPEKKKKRTQPAKPKKVIGIIDHFKPQDLTGVAKE
TDMFEDVEFCILNGTEDHPKAELEKGVASCGGVVVQNAGRDTYCVIAGVENMRVKNLVLS
DQHDVVWATWLLECLGQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLR
EVFGRISDAQASAAANVSQVERRCGWEDLPTSMFRPFEVYMDSCTDIGDPKTAIPATCLD
IRALEFRYHGGSVVRKLEEGVTHVIITEETRLADLRALRRCFRRKFKIVRESWVTDSITA
GHLMNDTDYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagcgatgctgcaggtcagccctctgttgctgctcaggttcct
ttccttcatctctgtaccacgttagagaaaatccagaagtctaaactccgtccagataaa
tccaagatcctcaaggatttcattgagtcatggaggaagttccattctgccctccacaaa
gacaaccctaaaacaacagactctttctacccagctatgcgcctcttagtcccctccttc
gaacgagagcgtatggcgtatggcatcaaagaaagcatgttagctaaactctatattgac
gtattaggcctcccaaagaatggccctgaggccaataaactgttgaactaccgtgctccc
actacatcccagggagaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cggtgcaccggcaaaggaaacctcagcatcaaagaagtcaatgactttctggactcggtg
gctatcaacaatgctggcaagcagaaggatcttgtgaaaaagagtctgctgcacctcatc
acccagagctcggctctcgagcaaaagtggctcatcagaatgattctgaaggacatgaag
ctcgggatcagcaaagaaactgttctccaagtcttccacccagacgctcctgagctctat
aatgtcaacacagacttaaacaaggtctgccagcagctccacaacccctccgtgtcttta
agcgaagtttcaatcggactcttctctgcttttaagcctatgttggcggctatggcgaac
atccgcagtgtggagaaacagatgggaggcagccctttttacattcagaccaagctggat
ggagagcgtatacaactgcacaaagacggggatgtgtacaagtacttcacccgaaatgct
tttgaatacacccagcagtttggaggatccccactggagggctcactgacaccttacatc
cacaacaattttaaaagccacattgtgaactgcatcctcgatggtgagatgatggcgtac
agcccgaccacagacaccttcatgcagaaagggagcaaattcgacatcaagagactcatg
gacgactctgagttacagacgtgcttctgcgtgtttgacgtgttgttagtcaacgaccag
aagcttggcaaggaaacgctgaagaagcgctacgagacccttcagacagttttcagtcca
gtcaagggaaggatacacctggtgccaaagacggatgccagaaccatgcaggaggtggtg
aatgcgctgaatgatgccatcgacagcagagaagagggaatcatggtgaaggatcctctg
tccatctacaaacccgacaagcggggggagggatggctgaaaataaagcccgaatatgtg
gacggattgatggatgagctcgacctgctgattgttggtggctactggggtaaagggaga
cggggtggtatgatgtcccacttcttatgcgccgttgccgaagctccaaagcctggcgag
aaaccctcggttttccacacactctgccgcatcggctctggctacaccatgaaggagttg
tatgacctcggtttaaagcttgccaagcactggaaagtctatcggaagaatgacccacca
gcatccatcttgtgtggaacagagaaacccgaagtttacatcgaaccctgcaactcggtc
atcctccaggtcagggcggctgaaatagtcggaagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgaggacaaggactggcaccagtgcatgacc
gtggcagagctggatcagttccgcggcaaggcgtccgggaaactggcctcgcgtcacctt
cgcatcgatggtgacgagccggaaaaaaagaagaagcgcactcagccagccaaacccaag
aaggtgatcgggatcattgaccactttaagccccaggacctaactggggttgccaaggag
acggatatgttcgaggatgtggagttttgtatcctgaacggcacagaggatcaccccaag
gctgagctggaaaagggcgtggccagttgtggaggtgtcgtggttcagaacgcagggcgg
gacacctactgcgtgatcgccggcgtggagaacatgcgcgtgaagaacctggttttgtcc
gaccagcatgacgtggtgtgggccacctggctgctcgagtgcctcggccagaaggaagtg
gtcccgtggcaaccgcgccacatgatccacatgtcgccctcgaccagggagcactttgcc
aaggagtacgacagctacggggacagctactttgtggacacggacgagcagcagctgcgg
gaggtgtttggccggatcagcgacgcgcaggcgtccgcggcggcgaacgtcagccaggta
gagcggcgttgtggctgggaggaccttcccaccagcatgttcagacccttcgaggtttac
atggacagctgcaccgacataggagaccctaaaaccgccatacctgccacctgcttggac
atcagggcgctggagtttcgctaccatggagggagtgtggtgcggaagttagaggaagga
gtcactcatgtcattatcacagaggaaacaagacttgcggatttaagggctctgaggcgc
tgctttaggaggaagtttaagattgtaagagaatcatgggtgactgattcaatcacagca
gggcatctgatgaacgacactgactacttagtttaa
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