Perca flavescens (yellow perch): 114565277
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Entry
114565277 CDS
T07494
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03013
Nucleocytoplasmic transport
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114565277 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
114565277 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114565277 (thoc1)
03041 Spliceosome [BR:
pflv03041
]
114565277 (thoc1)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
114565277 (thoc1)
Spliceosome [BR:
pflv03041
]
Complex C
Other components
EJC/TREX
114565277 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114565277 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
114565277
NCBI-ProteinID:
XP_028449025
LinkDB
All DBs
Position
12:16920294..16927091
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AA seq
654 aa
AA seq
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MSPPLFNFVDAKDKFTASARNALVCKTSKPLIHAFNQFPGNEAEKKTTFDQALRGVLGDQ
IVEQTGSCDEYLSLIYLSISAVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENITVFNKNEQESTLGQKHTEEKEDGMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKLCWMTFLKFSDETLAVFKSYKLDDMQASKRKLEEMRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNCVLNDDQTAWIEETTKLV
YQLLREIPPDGDQFATMVEHILNTEESWNSWKNEGCSSFVKERPVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEDDDDDNGDNLLKDSNDSPSIQSKMVTNQQMDDIAAKLGAQWKMLASQLEMKAVE
LREIETDSEDVDMQAKLLLVAWQDREGSQATVESLVTALNAAGFSQIADNLNEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgcccttattcaattttgtcgacgctaaagacaaatttacggcgtctgccaga
aatgccctagtatgtaaaaccagcaaacctttaatacatgctttcaaccagttccctggg
aatgaggcagaaaagaagaccacatttgaccaggcgctgaggggggttcttggtgatcag
attgttgagcagacggggagctgcgatgaatacttgtctctcatctacctgagtatttct
gcagttacagaaggtatctgttctgctacaactccttttcttctgcttggagatgtactg
gactgtcttcctctcgaccaatgtgacaaaatattctcttttgtcgaggagaatgtctcc
acctggaaatcgaactctttttacactgctgggaagaactacttgttgaggatgtgtaat
gatcttttaaggaggctgtccaaatcccagaatactgtattctgtgggcgaatccagctt
ttcctggcacgtctcttccctctgtctgaaaaatcaggtctcaatctgcagagccagttt
aatctggagaatataacagtgttcaacaaaaatgaacaagaaagcactctgggccagaag
cacacagaagaaaaggaagatggcatggaggtggaagaaggagaaatgggagaggatgat
gctcctgcaccatgttccattccgattgactacaacttgtacagaaagttctggacactg
caggactacttcagaaaccctgtgcagtgttacgataaattatgttggatgacattcctt
aagttctcagatgagactttggcagtgttcaagagctataaactggatgacatgcaggcc
tctaagagaaagctggaggagatgagagcatctggaggagagcacgtctactttgccaag
tttctaacaagtgagaagctcatggacttgcagctcagcgacagcaacttcaggcggcac
attttactgcagtacctcatcctcttccagtacctgaagggtcaggtcaagttcaaaagc
tccaactgtgttctgaacgatgaccagactgcatggattgaagagacaactaaactggtt
tatcagctgctgagagagatccctcctgatggagaccagtttgccactatggttgagcat
attctcaacacagaggagagctggaatagctggaaaaatgagggatgttcgagctttgtg
aaagaaaggccagtagatgacaaacccaaaagacccaccaggaaaagacaagctccagaa
gacttccttggaaaagggccagatcgcaagattttcatgggaaatgatgagttgactcga
ctgtggaacctgaaccaggacaacatggaggcctgcaagtcagacagcagggagttcatg
ccatcactggacgaattctttgcggaagccattgaacaggccgaccctgctaacatggtg
gaggaagagtacaaggttgtgcggaacccaaactacggctggcgtgctctaaggctgctg
tccaggagaagtccacacttctttcaaccaactaaccagaagttcaagagcctggcagac
tacctagacagcatggtcagcaaactggccaaagaattgccgaaggatattccctccgaa
gagatcaagacgggagaagacgatgatgacgacaatggagacaatcttctcaaagacagc
aatgacagcccgagcatacagagcaagatggtgacaaaccagcagatggatgacatagca
gccaaactgggcgcgcagtggaagatgctggcatcccagttggagatgaaggcagtggag
ttgcgagagattgagacagacagtgaagatgttgacatgcaggccaaactactgcttgta
gcctggcaggatagagagggatcacaagccactgtggagagcctggttacagctcttaat
gctgcaggattctcccagattgcagacaacctcaatgaggcttaa
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integrated database retrieval system
