Perca flavescens (yellow perch): 114565500
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Entry
114565500 CDS
T07494
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03030
DNA replication
pflv03410
Base excision repair
pflv03420
Nucleotide excision repair
pflv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114565500 (lig1)
03410 Base excision repair
114565500 (lig1)
03420 Nucleotide excision repair
114565500 (lig1)
03430 Mismatch repair
114565500 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pflv03032
]
114565500 (lig1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114565500 (lig1)
Enzymes [BR:
pflv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114565500 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
114565500 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
114565500 (lig1)
DNA replication proteins [BR:
pflv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
114565500 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
114565500 (lig1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
114565500 (lig1)
NER (nucleotide excision repair)
Other NER factors
114565500 (lig1)
MMR (mismatch excision repair)
Other MMR factors
114565500 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
114565500
NCBI-ProteinID:
XP_028449387
LinkDB
All DBs
Position
12:9779913..9849931
Genome browser
AA seq
1015 aa
AA seq
DB search
MQRSIASFFQPKCKDKDMQKKSTDGPVKKPVKSPLKVQNGVQKADSTVTKKVAKRSRQIL
DSDDDDAPVVKEQVATKGPGDKEALGKTEKKDAVFTAVPTPLSPPPAPAAPVTPTTPATP
ASSASPGTPGTPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKDEAEAKEEQGQQNK
RARVENSASGTGNTDEPMEEDAKEERVEKAVAVANSPDEEEVKKKKREEEEKAKEEERVK
QTSSDEKGKKAEGAENEEEAKEKTDDEKRPAAAKKKEAVEKDTQEREGSPKSQTARKQKE
AKEQKDKEPPKKAPISSFFAPRKAVVKTEKAEEREGEKKTSAERKPSAEDSKDTKSESTS
GQTDYDPSRPKYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLL
LSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGL
VAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARY
IVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSTESRRAWIEEKSL
ILKQTYCEMPNYDVIIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEA
AFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRVPKVKKDSVVSCVLDSE
AVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLSRRRAL
LKESFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHN
WLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFK
DEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGM
VDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagtgcaaagacaaggatatgcagaag
aaatccacagatggaccagtgaaaaaacctgtgaaaagccctctcaaggtgcagaacggt
gttcagaaggctgattcaaccgtcaccaagaaggttgccaaacgcagccgtcagatcctg
gacagcgacgatgacgacgctccggtcgttaaagagcaagtcgccaccaagggacccgga
gacaaagaagctcttggtaaaacagaaaagaaggatgctgtctttacggcagttcccacc
cccctgtctcctccacctgccccggccgcccctgtaactcccactactccagccacccca
gcttcttcggcttcacccgggactcccggcaccccaaactccatctccccctctggcatc
gttaaacgcaagactgcgaggaagatgttccccaagaggaagctggatgagagcaggagc
ggcagtgagagtcagaaagatgaagcagaggccaaggaggagcagggtcagcaaaacaaa
cgcgcccgtgtggagaacagcgccagtggcacagggaacacagatgagcccatggaggag
gatgcaaaggaagagagagttgaaaaggcagtggccgtagctaacagcccagatgaggag
gaggtgaagaagaagaagagagaggaagaagagaaggccaaggaggaggagcgggtgaag
caaacgagctctgatgagaagggaaaaaaagctgagggggcggaaaatgaagaggaagca
aaggagaagaccgatgatgagaaaaggcctgccgctgccaagaagaaggaggcggttgaa
aaggacacgcaagagcgagaagggagcccaaaaagtcaaacggcgagaaagcagaaagaa
gcaaaagagcagaaagataaggagccgcccaagaaagcccccatcagcagtttctttgct
ccaagaaaagctgtagtgaagacggagaaagcagaggagagggaaggggagaaaaagacg
agtgcagagaggaagccctcagcagaggacagtaaagacacaaaaagtgagtcgacttcc
ggacaaacggactacgatccatccaggcccaaataccatcctgtggaccatgcctgctgg
aagcagggccaaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagag
gactctggcaggctgagaaacatcgagacgctgtcgaacctacttcgctctgtgctgctg
ctctctccagatgatctgttgtgctgtgtgtacctgtgtttgaaccagctcggtcctgcc
tacctggggatggagcttggtgttggagaaacggtgctaatgaaagctgttgctcaagca
actgggcgacaattggacaaaatcaaggcagaggcgcaggagaaaggtgatttgggcctt
gtggccgagagttcccgtagcaaccagcgcatgatgtttcagccggccagtttgacagca
gggggcgtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggccatgaat
aagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgaggcccgctat
atagtcaggtccctggctgggaagctgaggataggcctggctgagcagagtgtcctatct
gcactgagccaggctgtgtgcctgaccccccctggacaaggtttccctcccgctgtgatc
gacgcagggaagggtatgagcactgagagcaggcgggcctggatcgaagagaagagtctc
attctcaaacagacttactgcgagatgcccaattacgacgtcatcatccctgttctgcta
aaagaaggcatagacgagctacccaatcactgcaagctcactccaggtgtgccgttgaga
cccatgttggctcaccccaccaagggtgtcggcgaggtgatgaagaggtttgatgaggcg
gcgttcacctgcgaatacaaatacgatggagagcgagcacagattcacattctggagagt
ggcgaggttcgcgtattcagccgcaaccaggaagacaacaccagcaaataccccgatatc
atctctcgcgttcccaaggtgaagaaggactctgtggtgtcgtgcgtcctggactcggag
gcggtggcctgggatcgggagaagaaacagatccagcccttccaggtcctcaccacccgc
aagagaaaggacgtggatgcttctgagatcaaagtccaggtgtgcgtgtacgcctttgac
ctgctctatctcaacggcgagtctctagtgcgacagccgttgagtcggcgtcgggctcta
ctgaaagaaagcttctcagaggtggagggagagtttgtgttcgcccgatccatcgactcc
gacaacacagacaccatcgcagagttcctggagcagtctgtccgagactcctgcgagggt
ctaatggtgaaaactctggagaaggatgccacctatgaaattgccaagcgctctcacaac
tggctcaagctgaagaaagactacctggacggggtgggcgacacagtcgacctgtgtgtg
atcggcgcctacctgggaaaaggcaagaggacgggcacctacgggggcttcctgctggcc
tgctacgacgaggacaacgaggaattccagtcagtctgcaagatcgggacaggcttcaag
gatgaagatctggagcagcattacaagttcttaaaggagcacattctgcccaagccccgt
gcctactaccgcatcgaccaatcagcagagcccgatgtgtggctggacgccgtgcaggtt
tgggaggtgaagtgcgctgacctgtcgctgtcgcccgtctacaaggccgctatgggaatg
gtggatccagaaaagggcatttccctgaggttccctcgcttccttcggatcagagacgac
aagaagccagaggacgccacgaccggagctcagattgctgatttgtacaagaagcagcag
cagattcagaaccagggtgagaaagctgaccccgaggactactactga
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