Perca flavescens (yellow perch): 114565572
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Entry
114565572 CDS
T07494
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03013
Nucleocytoplasmic transport
pflv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114565572
03015 mRNA surveillance pathway
114565572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114565572
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114565572
5.6.2.5 RNA 5'-3' helicase
114565572
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114565572
mRNA cycle factors
Common to processing body (P body) and stress granule
114565572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114565572
NCBI-ProteinID:
XP_028449510
LinkDB
All DBs
Position
12:12494468..12516900
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AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGMLQNGEDSVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSSLKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICSTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGSNPMTSLNI
PIPFNLVMPPIPPPGYMGQVNGPSVGHGGGMKGKAGSGAGGGTRGGRQRNRGNMGNHSSG
HGGADRHGGHMSGSQASQDLGSQPFSQGPLTQGYMNMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgatctactgggagcggacacccagggctcagagtacgacttcaccgattttaccctg
ccgagccagacccagactcaaggccaaacccagagtcagctagataaccaggttaatggc
cctgacggcatgctacagaatggagaggactctgtggtaaaagccagtcagctgctggca
gagttgaactttgaggaggatgaggaggacacctactacaccaaggatctccctgtacat
gcatgcagttactgtggcattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgtaatggccgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtcgaaggaggttaccctgcataaagatggccctctgggggaaactgtactg
gagtgctacaactgtggctgtcgcaatgtcttccttctgggcttcatccctgccaaagct
gactcggtagtggtgttactatgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcccagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaaaatcccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcag
ataaacaagctggaggaactctggaaggaaaatcccactgcgaccctggaggacctggag
aagcctggtgtggatgaggagccccagcatgtgctgctccgctatgaggatgcctaccag
taccagaacatctttggtcctctcgtcaagctcgaggctgactacgataagaaactcaaa
gagtctcagacacaagacaacattactgtcagatgggacttgggcctgaataaaaagagg
attgcttatttcactcttcccaagacagactctgatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggagatgagattgccatagagctaaggagcagtgccggggct
ccagtggagatcccccacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagttccctgaagacgtttgccgtggatgagacttcagtgtcgggttacatc
taccacaaactgctgggacatgaagtagaggatgtggtcatcaagtgccagctgcccaaa
cgcttcaccgctcaaggcctgcctgatcttaaccattcacaggtgtatgctgtgaagaca
gtgctacagcgtccactcagtctgatccagggtcctcctggcacagggaagaccgtaacc
tctgccaccatcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgct
cccagtaacatcgccgtcgaccagctgacagaaaagatccaccagacaggcctcaaggtg
gtgaggctgtgtgccaagagcagggaggctatcgactcgcctgtgtccttcctggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaagctccaacagctgaag
gacgagactggagagctgtcctcctcagacgagaagcgctatagagctctgagacgcacc
gctgagagggagctgcttatgaatgccgatgtgatctgctctacctgtgttggggcgggg
gatcctcgtctggccaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
accgaaccagagtgcatggtgcctgtcgtcctgggggccaaacagttgattctggtgggt
gaccactgccagctaggccccgtggtgatgtgtaagaaggcagctaaagcaggtttgtca
cagtctctgtttgagcgtcttgtcgttttggggatccggccaattcgcctgcaggttcag
tatcgcatgcacccggccctcagcgccttcccctccaacatcttctatgagggctctctg
caaaatggagtcactgccgcggaccgtgtgaagaaaggctttgacttccagtggccacag
cccgacaagcccatgttcttttatgtcacccaaggccaagaggaaattgccagctctgga
acgtcctatctcaacaggactgaggcagccaatgtggagaaaataaccacaaggttgctg
aaggctggagcaaaacccgatcagattggaatcattacgccctacgagggacagaggtcc
tacctggtccagtacatgcagttcagtggctccctccatactaaactctaccaggaggtg
gaaatagccagtgtggatgcctttcaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctcaatgtg
gcactcactagggccaggtatggtgtgattattgtgggaaaccccaaggccttgtccaag
cagcctctgtggaaccacctgttgaattactacaaggagcagaaggtcctggttgaaggc
ccccttaacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaac
accatcaaccctggtggtcgattcatgagcacagccatgtatgatgccagggaggccctc
attcctggatcggtttatgaccgtagcagcaacggacgttcgtccaatatgtatttccag
acccatgaccagattggtatgatcggaacaggctccaatccaatgacttccctgaacatc
cccatccccttcaaccttgtgatgccccccatacctccacctgggtacatgggacaggtc
aatgggccctcagtgggccatggcgggggtatgaaaggcaaggcaggcagcggagcaggc
ggcgggacgcgaggagggcgtcaaagaaaccgtggcaacatggggaaccacagcagcgga
cacggaggagcagaccgacacggaggccacatgagtggcagccaggccagccaggacctg
ggctcccagcccttctcccaggggcctctgacgcagggctacatgaacatgagccagccg
tctcaaatgagccagcctgggctctcccagcctgaactctcccaggacagttacctagga
gatgagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggaa
cgggcctaccaacacggtgtgactggactgtcccagtactag
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