Perca flavescens (yellow perch): 114567080
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Entry
114567080 CDS
T07494
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114567080 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114567080 (ddx46)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114567080 (ddx46)
Spliceosome [BR:
pflv03041
]
Complex A
U2 snRNP components
U2 related factors
114567080 (ddx46)
Complex B
114567080 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
114567080
NCBI-ProteinID:
XP_028451780
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All DBs
Position
13:24084551..24099083
Genome browser
AA seq
1064 aa
AA seq
DB search
MGRESRYVRNIRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRS
RDRKRVRRSRSRERRRSRSRDRRRSGSRSRARRSRSGSPSKSRRPEESRSNEKDNIDPLS
DKKKIKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGELKRELEEM
KQGKKWSLEDDEDDDEDVSAPMEGDDDEDGEEKEEMKEKEITEEKKEEKEEETPMVQQAE
EDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTLTKVVTVVKTKKGPNTHKKKGELM
ENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEPYRKNFYVEVPELARM
SPEEVNVYRLELEGIAVKGKGCPKPIKTWVQCGVSMKILGAMRKHGYEKPTPIQAQAIPA
IMSGRDLIGIAKTGSGKTIAFLMPMFRHIMDQRPLEESEGPISIIMTPTRELALQITKEC
KKFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTY
VVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEVQVGG
RSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADTLLKDLMKASYP
CMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVH
RAGRTGRAGNKGFAYTFITEDQVRYAGDIIKALELSGSPVPSELERLWASFKDQQKAEGK
TIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKK
RVKDLSAPGSATGAAGSGAATSATTGGLPGLGPPSAGNIQKLEMAKRLALKINAQKNLGA
EAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEEQRAAEQAE
TIKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIY
LAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgaggtatgtccgaaatatcagacactacaggaagcgttctgcgtct
cggggacggtcaggtagccgatcaaagagtcgctccccggacaaacgctccaagaaagat
gaccgagaccgaaacaggagggaacggtcacggagccgggaccgccgcaggtcccggtcc
agggacagaaaacgagtcaggcgatcccggagcagagagaggaggaggtccagaagccga
gacaggaggaggtctggcagcaggagccgagcccgcaggtcccgatctggtagccccagc
aagagcaggagaccagaagagtccaggagcaatgagaaagacaacattgatcctttatct
gacaagaaaaagattaaagaggagaaagaggatgagaaggttgaggatcaagactttgac
caaaacaagctggaggaggagatgaggaagaggaaggagcgagtggagaagtggagggaa
gagcagaggaagaaggccattgaaaacattggagaactcaagagagaactggaggagatg
aagcagggcaagaagtggagcctggaggatgacgaggatgatgacgaagatgtttcagct
ccaatggagggagacgatgacgaagatggggaagagaaggaggagatgaaagagaaggag
ataactgaggagaagaaagaggagaaggaggaggagactcccatggtgcagcaggcggag
gaggatgacgtggatcctctggacgcctacatggaggaggtgaaacaggaggtgaagaag
ttcaacatgggagccatgaaaggaaatgataagaaaggagcaatgacattaaccaaagtg
gtgaccgttgttaaaaccaagaaaggacccaacactcacaaaaagaagggcgagctgatg
gagaatgaccaggatgctatggaatactcctcagaggaggaggaggtggatctgcagacg
gctctgactggcttccagaccaaacaaaggaaggtcctagagcccgttgaccacggaaag
atccaatacgagccgtaccgcaaaaacttctatgtggaggtccctgagctcgccaggatg
agtccagaagaagtgaacgtgtacaggctggaactggaaggcattgccgttaaagggaag
ggctgtcccaaacccatcaagacctgggtgcagtgcggtgtgtctatgaagatcctcggt
gctatgagaaagcacggctacgagaagcccacccctatccaggcccaggccatccctgcc
atcatgtcaggccgagacctgattggcatcgccaagaccggcagcgggaaaaccatagcc
ttcctgatgcccatgttccgacacatcatggaccagaggcccctggaggagtctgagggc
ccaatctctataatcatgaccccaaccagagaattggctctgcagatcacaaaggaatgt
aagaagttctctaaacagctgggactcagggtggtgtgtgtttatggaggcactggcatc
agcgaacagattgctgagctgaagagaggagctgagatcatcgtgtgcacacctggaaga
atgattgacatgttgggggccaacagcggtcgtgtcacaaacctgcgcagagtaacatat
gtggtgttggatgaagcagacaggatgtttgacatgggctttgagccacaggtgatgcgt
attgtggacaacgtgcgtccagaccgccagacggtcatgttttcggctaccttccccaga
gccatggaggccttggctcgtaggatcctggccaagcccatcgaggtccaggtgggaggc
cgcagcgtcgtctgctctgatgtggaacaacacgtgctagtgattgaggaggacaagaag
ttcctgaagttgctagagattctgggtcactaccaggagaagggctcggtcatcatcttt
gtggacaaacaggagcatgcagacacactgctaaaagacctgatgaaagcctcgtacccc
tgcatgtcactgcatggcggaattgaccagtacgacagagacagcatcatcaacgacttt
aagaatggagcatgtcgtctgatggtggccacctctgtggcagccagaggcctggacgtc
aagcagctgatcctggtggtcaactacaactgtcccaaccactacgaggactacgtccac
agggccgggcgcacaggcagagcaggcaacaagggctttgcctacaccttcatcacagag
gatcaggttcgctatgctggggatatcatcaaagctttggagctctccggctctcctgtc
ccgtctgaactagagcggctttgggcctccttcaaagaccaacagaaagcggagggtaag
accatcaagagcagcagcggcttctctggaaaaggctttaagtttgatgaaacggaacac
gcgttggcgaatgagagaaagaagttgcagaaagctgctcttggactgcaggactcggat
gatgaggacggagccctggatattgaggagcaaattgagagcatgttcaactccaagaag
agggtgaaggatctgtctgctcccggctcggccaccggtgctgcaggatcaggtgccgcc
acatcagctaccacaggagggctgccaggcctcgggcctccatctgctggaaacatccag
aaactggagatggccaagaggctggcgctcaagatcaacgctcagaagaacctgggcgcc
gaggctcaggacgtgatgcagcaggccaccaacgccatcctgcggggcggtaccatcatg
acaccctctgtctcagccaagaccatcgcggagcagctggcggagaagatcaacgccaag
ctgaactacacccccgtggagaagctggaggaggagcagcgggcggctgaacaggccgag
accatcaagagatacgaagaggagctggagatcaacgacttccctcagacggcccggtgg
aaggtgacatctaaagaagctctgcagaggatcggtgaatactctgaagccgccatcacc
atcagaggaacctatttccctccaggcaaagagcccaaggagggagaacgcaagatctac
ctggctattgaaagtgcaaatgaactggctgtgcagaaagccaaaacggagattacgcgg
ttaatcaaggaggagctcatcagattacaaaattcctaccagccgacaagcaaaggccgg
tacaaagtgttgtag
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