Pseudomonas fluorescens UK4: HZ99_18535
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Entry
HZ99_18535 CDS
T03319
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HZ99_18535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfn03021
]
HZ99_18535
Transcription machinery [BR:
pfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HZ99_18535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_31
HTH_24
Sigma70_ECF
HTH_40
HTH_3
HTH_17
HTH_11
MarR_2
HTH_IclR
HTH_Tnp_4
GerE
MarR
TnsD
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
AIG04080
UniProt:
A0A379I5A1
LinkDB
All DBs
Position
4042815..4043324
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AA seq
169 aa
AA seq
DB search
MDTATDSQQQLHLLYRDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLVSGRFPGARESR
SYLTQIARNLVIDQWRRLRIERAYLQSIAHLPEPESPSLETRALILETLMQIDAMLDRMP
ENVRRAFLLSQFEGLTYAQIAERLGVTISSVQKYMTRAIIACYQVAYEA
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgcgactgacagccagcaacagcttcatctcctgtaccgcgaccatcatggc
tggctgcaaggctggctgcgcaagcgtctgggcgaccgcgagcacgccgccgacgtggcg
caggacacgttcctgcgcctgctggtgtcggggcgttttcccggtgccagggaaagccgc
agctacctgacacagatcgcccgcaacctggtgatcgaccagtggcgccgcctgcgcatc
gagcgcgcctacctgcaaagcattgcccatttgccggagcccgagtcgccgtccctggaa
acccgtgcgctgattctcgaaaccctgatgcagatcgacgccatgctcgaccgcatgccc
gagaacgtgcgccgggcgttcctgttgtcgcagttcgagggcctgacctacgcgcagatc
gccgaacgcctgggggtgacgatcagctcggtgcagaagtacatgacccgcgcgatcatc
gcctgctaccaagtggcctacgaagcatga
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