KEGG   Pseudomonas fluorescens UK4: HZ99_26620
Entry
HZ99_26620        CDS       T03319                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfn  Pseudomonas fluorescens UK4
Pathway
pfn02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pfn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HZ99_26620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfn03021]
    HZ99_26620
Transcription machinery [BR:pfn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HZ99_26620
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF HTH_23 GerE HTH_11 HTH_28 HTH_40 HTH_Tnp_ISL3 HTH_29 Phage_antitermQ HTH_24 HTH_17 DUF1492 Terminase_5 HTH_65 Phage_NinH
Other DBs
NCBI-ProteinID: AIG05589
UniProt: A0A379IBD7
LinkDB
Position
complement(5791955..5792473)
AA seq 172 aa
MSVGEPPFQREITQLYSEHHGWLLTWLRRKLGCRHNAADLAQDTFARILNTRESVATIRE
PRAYLSTTARRLIIDQARRRQIEQAYLQELALTVDALEGFQSPEQIHTTLEALEQIAFIL
EGMHEYSRQAFVLYYLEELTQQQIARQLKLSERTVRKYLIQALMHCGHSMDT
NT seq 519 nt   +upstreamnt  +downstreamnt
atgtctgtgggtgaaccgccattccaacgggaaataacccagctctacagcgagcaccat
ggctggctgctcacctggttgcggcgcaagttgggctgtcggcacaacgccgccgacctg
gcacaggacactttcgcacgcatcctgaacacccgtgagtcggtggcgacgatccgtgaa
cccagggcctatctgagcaccaccgcccggcgactgatcatcgaccaggcccggcgcagg
cagatcgaacaggcctacctgcaggagctggcgctgacggtagacgcgctggagggattc
cagtcgccggagcagatccacaccacccttgaggccctggaacagatcgcgtttatcctc
gaaggcatgcatgagtattcgcgccaggcgtttgtgctctattacctggaagaactgacc
caacaacagatcgcccgtcagctcaaactctcggaacgtaccgtgcgcaaatacctgatc
caggccctgatgcattgcggccatagcatggacacctga

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