Pseudomonas fluorescens UK4: HZ99_26620
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Entry
HZ99_26620 CDS
T03319
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfn
Pseudomonas fluorescens UK4
Pathway
pfn02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HZ99_26620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfn03021
]
HZ99_26620
Transcription machinery [BR:
pfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HZ99_26620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
GerE
HTH_11
HTH_28
HTH_40
HTH_Tnp_ISL3
HTH_29
Phage_antitermQ
HTH_24
HTH_17
DUF1492
Terminase_5
HTH_65
Phage_NinH
Motif
Other DBs
NCBI-ProteinID:
AIG05589
UniProt:
A0A379IBD7
LinkDB
All DBs
Position
complement(5791955..5792473)
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AA seq
172 aa
AA seq
DB search
MSVGEPPFQREITQLYSEHHGWLLTWLRRKLGCRHNAADLAQDTFARILNTRESVATIRE
PRAYLSTTARRLIIDQARRRQIEQAYLQELALTVDALEGFQSPEQIHTTLEALEQIAFIL
EGMHEYSRQAFVLYYLEELTQQQIARQLKLSERTVRKYLIQALMHCGHSMDT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgggtgaaccgccattccaacgggaaataacccagctctacagcgagcaccat
ggctggctgctcacctggttgcggcgcaagttgggctgtcggcacaacgccgccgacctg
gcacaggacactttcgcacgcatcctgaacacccgtgagtcggtggcgacgatccgtgaa
cccagggcctatctgagcaccaccgcccggcgactgatcatcgaccaggcccggcgcagg
cagatcgaacaggcctacctgcaggagctggcgctgacggtagacgcgctggagggattc
cagtcgccggagcagatccacaccacccttgaggccctggaacagatcgcgtttatcctc
gaaggcatgcatgagtattcgcgccaggcgtttgtgctctattacctggaagaactgacc
caacaacagatcgcccgtcagctcaaactctcggaacgtaccgtgcgcaaatacctgatc
caggccctgatgcattgcggccatagcatggacacctga
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integrated database retrieval system