Pseudomonas fluorescens Pf0-1: Pfl01_3866
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Entry
Pfl01_3866 CDS
T00283
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pfl01_3866 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_3866 (mfd)
Enzymes [BR:
pfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pfl01_3866 (mfd)
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pfl01_3866 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABA75603
UniProt:
Q3K9F1
LinkDB
All DBs
Position
4368861..4372310
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGAGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLDRLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAQLAEGNIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctccccggtgccgccctgagcctggcgattgccgaggctgccagcgctgccaagcgcttc
actctgcttttgaccgccgacagccagagcgccgaacggctggagcaggagctgagcttc
ttcgccccggatttgccggtgctgcatttccccgattgggaaaccctgccctacgatctg
ttttcgccgcaccaggacatcatctcccagcgcatcgccagcctttataggctgccggag
ctggagcacggcgtgctggtggtgccgatcaccaccgccctgcatcgtctggcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggtcagaagctcgacgtcgagcaa
atgcgctcgcggctcgaagccagtggctatcgctacgtcgacacggtctacgagcacggc
gagttcaccgtacgtggcgcactgatcgacctgttcccgatgggcagcaaactgccctat
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgtacctttgatccggaaaaccag
cgctccatcgacaaggtcgattcagtcaagcttctgccggccaaggaattcccgctgcag
aaagacgcggtcacccgcttcaaggcgcgttttcgcgagcgtttcgacgtcgacttccgt
cgctgcccgatctttcaggacctgagcagcggcatcacaccggccggtatcgagtactac
ctgccgctgttcttcgaggaaacctcgacgctgtttgattacctgccacaggacacccag
gtgttttcgctgccgggtatcgagcaggcggcggaaaacttctggaacgacgtacgcaat
cgttatgaagagcgccgcgtcgacccttcgcgtcctttattgccgccggccgaactgttc
ctgccggtggaggactgctttgcccgcctgaagaactggccgcgtgtggtcgccagtcag
caggatgttgagtccggtgcaggccgcgagcgtttcccggcgcaggcactgccgaatctg
gcgatcgaagccaaggctacccagccgctggccgcgctctcggcattcctcgacgaattt
cccggacgcgtgctgttcaccgccgaatccgccggtcgtcgcgaggtgctgctggagttg
ctggatcgcctgaagctacggccgaaaaccgtcgacagctggccggactttgtcgcaagc
aaggatcgcctggcgatcaccatcgccccgctcgacgaaggcctgatgctcgacgacccg
gcgctggcactggtcgcggaaagtccgctgttcggccagcgcgtgatgcagcgtcgccgt
cgcgaaaaacgcgccgacgccaacaacgatgcggtgatcaagaacctcaccgaactgcgt
gaaggcgcgccggtggtgcacatcgatcacggcgtcggccgttatctcggcctgacgatt
ctggaaatcgacaatcaggctgccgaattcctgacccttgaatacgccgagaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgatgcg
ctggccccgctgcaccgcctcggctccgaaacctggcagaaagccaagcgcaaggccgcc
gagcaagtgcgcgacgtggctgccgaattgctcgacatctacgcccgccgcgccgcacgc
gaaggttatgcgtttgccgatccaaaggccgattacgcgaccttcagcgccggcttcccg
ttcgaagaaaccccagaccagcaatccaccatcgaagccgtgcgcgaggacatgctttcg
ccgaaaccgatggatcgcctggtctgcggcgacgtcggtttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgccgtgcacggcggcaagcaagtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggcgaaggaagtgaacgcagcggtcgcccaa
ctggccgaaggcaatatcgacatcgtcatcggcactcacaagttgctgcaggacgacgtc
aagatcaaaaaccttgggctggtgatcatcgacgaagagcaccgcttcggtgtccgtcag
aaggaacagctcaaggccctgcgcagcgaagtcgacattcttacgctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcaatcatcgccacg
ccgccggcgcgacgcctctccgtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggctttgctgcgtgagctgctgcgtggcggtcaggtttactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgaactggccgaactggtgccggaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgatttctat
cacaaacgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgatgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggtctggcgcagttgcaccag
ctgcgtggccgcgttggtcgtagccaccaccaggcttacgcctacctgctgaccccgccg
cgccagcagatcaccggcgatgcggaaaaacgcctggaggcgattgcgaatactcaagac
cttggcgctggtttcgtgctggccaccaacgatctggaaatccgtggcgccggcgaattg
ctgggcgacggtcagagcgggcagattcaggccgttggattcacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacagccaaacctcgatcaaccgctc
ggcggtggtccggaagtcaacctgcgggtcccggcgctgattccggaagattacctgccg
gatgtgcacgctcgcctgatcctttacaagcgcatcgcttcggccaccgacgaggaaggc
ctgaaagatctgcaagtcgagatgatcgaccgctttggcctgttgccggaaccgaccaag
aatctggtgcgtatcacggcgctgaaattgcaggcagagcagctgggcatcaagaaagtc
gatggtggcccgcaaggtgggcgcatcgagttcgcggcacagacgccggtcgacccgatg
accctgatcaaactgatccagagccagccaaaacgctacaaattcgaaggcgccacgatg
ttcaagttccaggtgccgatggagcgcccggaagagcgctttaatactgtggaggcgctg
ttcgagcgcctcatcccgaaaactgcttga
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