Poecilia formosa (Amazon molly): 103131441
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Entry
103131441 CDS
T07984
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor03013
Nucleocytoplasmic transport
pfor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103131441 (setx)
03015 mRNA surveillance pathway
103131441 (setx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfor03019
]
103131441 (setx)
Enzymes [BR:
pfor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103131441 (setx)
5.6.2.5 RNA 5'-3' helicase
103131441 (setx)
Messenger RNA biogenesis [BR:
pfor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103131441 (setx)
mRNA cycle factors
Common to processing body (P body) and stress granule
103131441 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
nSTAND3
ATPase
Helicase_RecD
AAA_16
SRP54
DEAD
UvrD_C_2
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
103131441
NCBI-ProteinID:
XP_016522135
Ensembl:
ENSPFOG00000004469
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSVEAYGPNSQTLTFLDTEESELLGADTQGSEYDFIDFTLPSQTQTQGQTHSQLDNQVNG
SDVVLQNGDDPVVKASQLLAELNFEEDEEDAYYSKDLPLHACCCSVFYSLHFCSYCGIHD
PACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRN
VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQE
QLRARQITAQQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLV
KLEADYDKKLKESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDL
APPWKGIGHVIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTF
AVDETSVSGYIYHKLLGHEVEDVLIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQWPLSLI
QGPPGTGKTVTSATIVYHLARQGTGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSRE
AIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNA
DVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGPVV
MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR
VKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGGKPDQI
GIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGI
GFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL
MQFNKPRKLVNAINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNVYFQTHDQIGMIC
SGLGPMSSMNIPIPINLVMPPIPSPGYLGQLNGPSGGRGESTKNKSASTGGSGTRGARQR
NRGDVGIDGVQHGGHMTGSQASQDQGSQPFSQGPLTQGHISMSQPSQMSQPGLSQPELSQ
DSYLGDEFKSQFDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgaactcgcagaccctgacgttcctggacaccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcattgattttaccttg
ccaagccaaacgcagacgcagggccagacccacagccagttagataatcaggtcaacggt
tcggatgttgtgctgcagaatggagatgaccctgtggtgaaagctagccagctccttgca
gaattaaactttgaggaagatgaggaggatgcttactatagcaaggacctcccattgcat
gcctgctgttgttctgttttttattccttgcatttctgtagttactgtggaattcacgat
ccagcctgtgtggtctactgcaacaccagcaagaaatggttctgtaatggccgtgggaat
acatctggcagccacatcgtgaaccacctggtgagggccaagtccaaggaggtgaccctg
cacaaagatgggcctctgggagagacggtgttggagtgctacaactgtggctgccgcaac
gtcttcttgctgggcttcatcccagccaaggccgactcagtggtggtgttgctgtgcaga
cagccgtgtgccagtcagagtagcctgaaggacattaactgggacagctcccagtggcag
ccactcatccaggaccgctgcttcctgtcttggctggttaaaatcccctcagaacaggag
cagctccgggcccggcagatcaccgcccagcagatcaataagctggaggagctgtggaag
gaaaatcccactgctactctggaggacctggagaagcctggagtggacgaggagccacag
cacgtcctcctgcgttacgaggatgcctatcagtaccagaatatctttggacctcttgta
aagctggaggctgactatgataagaaactgaaagagtcacagactcaagaaaatataacg
attagatgggacctgggcctgaataaaaaaaggattgcttatttcacccttcccaagact
gactctgatatgcgactaatgcagggtgatgaaatctgcctcagatataaaggagacctg
gcccctccatggaaaggcattggacatgtcatcaaagttcctgacaactacggcgatgag
attgccattgagcttcggagtagtgccggagctccggtggagatccctcataacttccag
gtggactttgtgtggaagtccacctcctttgacaggatgcagagcgccctgaaaacattt
gctgtggatgagacttcagtttctggctacatctatcacaagttgctgggacacgaggtg
gaggacgtgctcattaagtgccagctgcctaagcgcttcactgctcaaggcctgcctgac
ctcaaccactctcaggtctatgctgtgaagacagtgttgcagtggcccctcagtctgatc
cagggtccccctggcacagggaagacggtcacctcagccaccatagtgtaccatctggct
aggcagggaaccggaccagtgctggtgtgtgctcctagtaacattgctgttgatcagctg
actgagaagattcaccagacggggctgaaggtagtgagactttgtgccaaaagcagggaa
gctattgattctccggtgtccttcctggctctgcacaaccagactcggaacatggaaagc
atgccagagctgcagaaactccagcagctgaaggatgagaccggagagctgtcgtcctct
gacgagaagcgctacagagctctgagacgcactgctgagcgggagctgctcatgaatgcc
gatgtgatctgctgcacgtgtgttggagcaggagatccccgtctggctaaaatgcagttt
cgatctatcttgattgatgaaagcactcaggccacagaaccagagtgcatggtgccggtt
gtccttgggaccaaacagctgattctggtgggggatcactgccagctaggacctgtggtg
atgtgtaagaaggcagcaaaagcaggcctgtcccagtctctgtttgagcgccttgtggtt
ctgggcatcaggcctatccgtctgcaggtccagtaccgcatgcacccagccctcagcgcc
ttcccctccaacatcttctatgagggctccttgcagaatggagttactgctgctgatcgg
gtgaaaaaaggcttcgatttccagtggccacagccagacaagcccatgttcttctatgtc
acccaaggccaagaggagatagcgagctctggaacatcctatctgaacagaactgaggct
gccaatgtggagaaaataaccacaaggttactgaaggctgggggtaaacccgaccagatt
ggcatcatcactccctatgaaggacagcggtcctacctggtccagtacatgcagttcagt
ggctccctccataccaagctctaccaggaagtggaaatcgccagtgtggatgccttccaa
ggcagagagaaggatttcatcatcctctcctgtgtgagagccaatgagcaccagggcatt
ggcttcctcaatgaccccagacgtctcaacgtggcactcaccagggcccgatacggagtg
atcattgtggggaatccgaaggccctttccaagcagcctctgtggaaccacctgctcaac
tattacaaggagcagaaggttctggtagaaggcccattgaacaacctgagagagagcctc
atgcagttcaacaagccacggaagctggtcaacgccatcaacccgggtggccgcttcatg
agcacagccatgtatgatgccagggaggcgctgattcctggctctgtttacgaccgcagc
agcaacggccgaccttccaacgtgtacttccagactcatgaccagatcggtatgatctgc
tctggactcggtccaatgtcgtccatgaacattcctattcccatcaaccttgtgatgcct
cctatcccttcacctggttatttaggacagctgaacggcccctctggaggtcgtggtgaa
agcacgaagaataaatcagccagcacaggcggcagtggaactcgaggtgctcgtcaaaga
aaccgtggagacgtgggaatagacggagttcagcacggaggtcacatgactggcagccag
gctagccaggaccagggctcccagccattctcccaggggcccctcacacaaggccacatc
agcatgagtcagccctcccagatgagccagcccgggctctcccagcctgaactgtcacag
gacagttacctaggagatgaattcaagtcccagtttgatgtggctctgtcccaggactcc
acataccagggggaacgggcctaccaacatggagtgactggactgtcccagtactag
DBGET
integrated database retrieval system
