Poecilia formosa (Amazon molly): 103137994
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Entry
103137994 CDS
T07984
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor03030
DNA replication
pfor03410
Base excision repair
pfor03420
Nucleotide excision repair
pfor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103137994 (lig1)
03410 Base excision repair
103137994 (lig1)
03420 Nucleotide excision repair
103137994 (lig1)
03430 Mismatch repair
103137994 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfor03032
]
103137994 (lig1)
03400 DNA repair and recombination proteins [BR:
pfor03400
]
103137994 (lig1)
Enzymes [BR:
pfor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103137994 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
103137994 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103137994 (lig1)
DNA replication proteins [BR:
pfor03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103137994 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103137994 (lig1)
DNA repair and recombination proteins [BR:
pfor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103137994 (lig1)
NER (nucleotide excision repair)
Other NER factors
103137994 (lig1)
MMR (mismatch excision repair)
Other MMR factors
103137994 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
103137994
NCBI-ProteinID:
XP_007552099
Ensembl:
ENSPFOG00000013438
UniProt:
A0A087Y6J3
LinkDB
All DBs
Position
Unknown
AA seq
1002 aa
AA seq
DB search
MQRSIASFFQPRIKVKDSQKKTADEPVNKPIKSPLKVQNGVQEADSPIKKVAKRSRQILD
SDEDEAPLVKEQGDKGAPAKTEKTDDVSQAVPTPLSPTPAPSTPITLETPETSASSTSSG
SPSSPSSTSTSRIVKRKTARKMFPKRKLDESESRKGESEVAEEQGQQNKRPRLESGVSSA
ENTDEPMEEGAKEEKVEKPVAEANSPDEEVGNEKTEGEKAKKEEEQVEEKISDEKEKKAE
GAEKKNEAKEKTDDEKRPSVAKDKVFEKDTKDTGSPKSQMEEKKQKEAKEQKDKEPAKKT
PISSFFAPRKAAVKTEKPEKNKGEKKTSAERKSSDEEQRDAKGGSASGETDYNPSRPNYH
PVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLC
LNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRTMF
QPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGL
AEQSVLAALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCEMPNYD
IIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERA
QIHILESGEVRIFSRNQEDNTSKYPDIISRLPKVKKDSVVSCVLDTEAVAWDREKKQIQP
FQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGEFL
FARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVG
DTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKE
HILAKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGISLRFPR
FLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcgttttttcagcccaggatcaaggttaaagacagccagaag
aaaactgcagatgaaccagtgaacaaacccattaaaagccccttgaaggtgcagaacggc
gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatcctggac
agcgacgaagacgaggcgccgcttgtaaaagaacaaggcgacaaaggagctcccgctaaa
accgagaagacggacgatgtgtcccaggccgttcccaccccgttgtctccaacgccggcc
ccatccacacccataaccctggaaaccccggagacgtcggcctcctcgacgtcttcaggg
tcgcccagttctcccagttccacctccacgtctagaattgtgaaacgcaaaactgcgagg
aagatgttccccaagaggaagctggatgagagcgagagtcggaaaggggagtcggaggtc
gcggaggagcagggtcagcaaaacaaacgaccccgcctggagagcggtgtcagcagtgca
gagaacaccgatgaacccatggaggagggagcaaaggaagaaaaggttgaaaagccagtg
gctgaggctaacagcccagacgaggaggtggggaacgagaaaacagaaggagagaaggcc
aagaaggaggaggagcaggtagaagaaaagatctctgatgagaaagaaaagaaagctgag
ggggcggaaaagaaaaatgaagcaaaggagaagacggatgatgagaaaaggccctctgtc
gccaaagacaaggtgtttgaaaaggacacgaaagacacagggagcccaaaaagtcaaatg
gaagaaaaaaagcagaaagaggcgaaggagcagaaagataaggagccggccaagaaaacc
ccaatcagcagtttctttgctcccagaaaagcagcagttaagacagagaaaccagagaag
aacaaaggagagaaaaagacgagtgcagagaggaagagctccgatgaggaacagagagat
gcaaaaggtggatcagcctcaggagagacagactacaatccatccagaccaaactaccat
ccggtggaccacgcctgctggaaacaaggccaaaaagtgccgtacttggcagtggctcgc
acctttgagaaaattgaagaggactctggcaggctgagaaacatcgagacgctgtcgaac
ctgctccgctcggtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgt
ctgaaccagctcggccccgcctaccttgggatggagctcggcgttggggagacggtgctg
atgaaagccgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggaggcgcag
gagaaaggagatttgggcctggtggccgagagttcccgtagcaaccagcgcaccatgttc
cagccggccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgccagcatg
agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcgtgc
cgcttctccgaggcccgctacatagtcaggtccctggctgggaagctgaggattggcctc
gctgagcagagtgtcctcgccgcgctgagccaggccgtctgcttgaccccgcctggacaa
ggtttccctcctgctgtgattgatgcagggaagggcatgagtgctgagagcaggcgggcc
tggatcgaagagaagagcctcattctgaaacaaacatactgtgaaatgccaaattatgac
atcatcatcccagttttactgaaagcaggcatcgaccagctgcccaaacactgcaaactc
actccaggagtcccgctgagacccatgttggctcaccccaccaagggtgtcggcgaggtg
atgaagaggtttgacgaggcggcgttcacctgcgagtacaaatatgatggagagcgggca
cagattcacattctggagagcggcgaagttcggattttcagccgcaaccaggaagacaac
accagcaaatacccagatatcatctcgcgcctccccaaggtgaagaaggactctgtagtg
tcttgtgttctggacacggaggcggtggcctgggatcgagagaagaaacagatccaaccc
ttccaagtcctcaccactcgtaagagaaaggatgtggacgcctccgagatcaaagtccaa
gtgtgtgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcgacagccg
ctgtgtcggcgtcgggagctgctgagagagagcttcacagaggtggagggagagtttctg
ttcgcccgttccatcgactctcacgacactgacgccatcgcagagttcctggagcagtcc
gtccgagactcctgcgagggcctgatggtgaagactctggagaaggatgcgacctacgag
attgccaaacgttctcacaattggctcaagttaaagaaggactacctggacggtgtgggc
gacacggtggacctctgcgtgatcggtgcctacctgggaaagggaaaacgaacaggcacc
tacggaggcttcctgctggcctgctacgatgaagacaatgaggagtttcagtcagtctgc
aagatcgggacaggctttaaggatgaagatctggagcagcattacaagtttttaaaggag
cacatcctggccaagccccgcccctactaccgcgtggaccaatcagctgagcccgacgtg
tggctggacgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcgcctgtc
tacaaggctgccatgggaatggtggatgcagagaaaggcatttctctgcggttccctcgc
ttccttcgcatcagagacgacaagaagcccgaggacgccaccaccggagctcagatcgct
gatttgtacaagaagcagcagcagattcagaatcaaggggagaaagctgacccggaggac
tactactga
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integrated database retrieval system
