Poecilia formosa (Amazon molly): 103142779
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Entry
103142779 CDS
T07984
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfor
Poecilia formosa (Amazon molly)
Pathway
pfor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103142779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfor03019
]
103142779
03041 Spliceosome [BR:
pfor03041
]
103142779
03009 Ribosome biogenesis [BR:
pfor03009
]
103142779
03016 Transfer RNA biogenesis [BR:
pfor03016
]
103142779
Enzymes [BR:
pfor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103142779
Messenger RNA biogenesis [BR:
pfor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103142779
Spliceosome [BR:
pfor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103142779
Complex C
U4/U6.U5 tri-SnRNP related factors
103142779
Ribosome biogenesis [BR:
pfor03009
]
Eukaryotic type
Pre-60S particles
Helicases
103142779
Transfer RNA biogenesis [BR:
pfor03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103142779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
Helicase_C
Motif
Other DBs
NCBI-GeneID:
103142779
NCBI-ProteinID:
XP_007559060
Ensembl:
ENSPFOG00000003141
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
VSLFISERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDYRPT
PLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDLGESGGGSGGGKWDRNRKGGTK
GPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFNNAVD
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGI
NMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIKKLE
DQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNEDTDF
GWGVVVNFSKKTNTKASGDSEPLYVVEVLLHCSKESVKNSATEAAKPAAPGETGEMQVVP
VMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGL
KKVIQKVEAFEHRMYTHTLHSDPNLESVYSLCERKAQIAAEVRTAKRELKKARTVLQMDE
LKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQATALLS
CFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMDVV
FAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFSEGITKI
KRDIVFAASLYL
NT seq
2380 nt
NT seq
+upstream
nt +downstream
nt
agtttctttgttcatttcagagcgtggcgtggtttgggaggaaaccatcatccttcttcc
tgataatgtgcattatgtattcctgtctgctaccatcccgaatgccaaacagtttgctga
gtggatctgtcatttacacaaacagccatgccatgtggtttacacagactaccggcccac
tccactgcaacattatatttttccagcagggggcgatggactccacctagtggttgatga
aaatggggacttcagagaagataatttcaacacagccatgcaggttctcagagatcttgg
ggagtccgggggcggcagtggaggtggcaagtgggatcgaaaccgaaagggaggcactaa
gggaccatccagtgttttcaagatagtgaagatgatcatggagaggaacttccagccggt
gatcattttcagcttcagtaagaaagactgcgaggcctacgccctgcaggtgtccaagct
ggattttaacaatgatgatgagaaacgtctggttgaagaagtgttcaacaatgcagtgga
ctgtctttcagatgaggacaagaagctgcctcaggtcgagcatgtgctgccactcttaaa
gagagggataggaatccatcatggaggactgctgcccatcctgaaagagacaattgagat
tctcttctctgagggtctgctcaaggccttgtttgctacagagaccttcgccatgggtat
taacatgccagctcggaccgttctcttcaccagcgcacgcaagtttgatggcaagaacca
ccgctttattacatcaggtgagtacatccagatgtcggggcgcgctggcaggagaggaat
ggatgacagaggaatagttatttttatggtggatgagaagatgagtccagctgtgggcaa
acagctactgaagggctcagcagaccctttgaacagtgccttccacctgacatacaacat
ggtgctcaacctgctgcgtgtagaagagatcaacccagagtacatgctggagaagtcctt
ctaccagtttcagcactacagggctttgcccggcgtcgttgagaaaattaagaagttaga
ggaccagtatcacaccattgagattcctaacgaggagagtgttgttacatactttaagat
caggcagcagctggctaagctgggtaaagagatacaagaattcatccacaagcccaaata
ctgcctgcccttccttcagccgggccgactcgtgaaggtgaagaatgaggataccgactt
tggctggggagtggttgtaaactttagcaagaaaacaaacacaaaggccagcggagactc
tgagccgctgtacgtagtcgaggttttgcttcactgtagtaaagaaagtgtaaaaaactc
tgcaactgaggcggccaagcctgctgctccaggggagaccggagagatgcaggtggttcc
agtgatgctccacctcctcacttcgatcagctcagttcgtctttacatccctaaagatct
caggccttttgacaacagacagctcatgctcaagtccatacaggaggtacagaagcggtt
cccggacggcgttcctttactcgaccccatcgatgacatgggcatcaaagaccccggcct
gaagaaggtcattcagaaggtggaggccttcgaacaccggatgtacacacacacactcca
cagcgatcccaacttagaatccgtctactccctgtgtgagaggaaagcacagatcgcagc
tgaggttcggaccgccaaacgggagctgaagaaagctcgcaccgtcctgcagatggacga
gctgaagtgccgaaagagagtcctccgaagactcggcttcgccagcccctctgatgtcat
cgagatgaaaggcagggtcgcctgtgaaatcagcagcgccgatgagctcctgctgacaga
gatggtgtttaacggcctcttcaacgacctgacggtggaacaagccaccgctctcctgtc
ctgcttcgtcttccaggagaacgctaacgagatgccaaagctaaccgagcagctggccgc
gccgctcagacaaatgcaggagtgtgcgaagcgcatcgccaaagtgtccgcagacgccaa
gctggaggttgatgaggagacgtacctaaaccagttcaaacctcacttgatggatgtggt
gttcgcctgggccaacggggccacgttcgctcagatctgtaagatgacggacgtctttga
aggaagcatcattcgctgcatgcggcgcctggaggaggtgctgcgacagatgtgctctgc
agccaaagccatcggtaacactgaactggagaacaagttttcagaaggcatcacaaagat
taagagagacatagttttcgctgccagtctctatttatag
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