KEGG   Pseudozyma flocculosa: PFL1_00560
Entry
PFL1_00560        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03013  Nucleocytoplasmic transport
pfp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    PFL1_00560
   03015 mRNA surveillance pathway
    PFL1_00560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_00560
Enzymes [BR:pfp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     PFL1_00560
    5.6.2.5  RNA 5'-3' helicase
     PFL1_00560
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     PFL1_00560
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     PFL1_00560
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD Helicase_RecD PIF1 nSTAND3 AAA_16 ATPase AAA_10 AAA_22 SRP54 UvrD_C_2 PhoH
Other DBs
NCBI-GeneID: 19314691
NCBI-ProteinID: XP_007876245
LinkDB
Position
Unknown
AA seq 1114 aa
MADVDPFEHLEGASNYGADASEYGFTDSASVVSGADSRLSRRNNGAKSGRTRAADQIDLD
LDLDLDLAAIKDLQLDEHDLEPHRHQHTGSKAAKPRSTRATDGDEVDELFDGMLDDGEAD
LLQNLPPHACAYCGIHNPSCVVKCLICNKWFCNSRGSTSGSHIVNHLVRAKHKEVCLHAE
SPLGETTPECYQCGAKNVFLLGFIPAKSETVVVLLCRQPCAAMTNSKDVIWDTSQWSPLI
EDRCFLTWLVKMPTEHEQMRARPITFQQINRLEEMWKENENATLEDLDKPGVDEEPDGIL
LRYEDAYQYQNIFGPLVKIEADYDRKLKESQTQSDLVVRWDQGLNQKKIAWMTLPKLESG
EVRLAVGDELKIRYRGEMAPPWEGVGHVIKIPNNVSDEVAIELRRADGVPEHCSHNFSAD
FVWKSTSFDRMQSAMKTFAVDEQSLSGYIYHKLLGHEIESATLRTAMPKRFSAPGLPELN
HSQVNAVKSVLQKPLSLIQGPPGTGKTVTSATIVYQLSKMNPGPVLVCAPSNVAVDQLTE
KIHATGLKVVRLTAKSREALDSPISFLTLHEQVANNDTHVELQKLIQLKNEQGELSSSDE
RKYKALTRACEKEILNTADVICCTCVGCGDPRLSKLKFRTVLIDEATQAAEPECMIPLVM
GCKQVVFVGDHLQLGPVIMNKKAARAGLSQSLFERLIMLGNRPIRLQVQYRMHPCLSDFP
SNMFYEGTLQNGVTAPERLRKNVDFPWPVPTLPMFFFQNLGQEEISSSGTSFLNRTEASS
VEKIVTQFFKAGVVPSQVGIVTPYEGQRSYVVNHMQMHGKLKKEFYKEVEVASVDAFQGR
EKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRARYGLVILGNPKVLNKHPLWHYLLVHY
KEKGCLVEGVLSNLQPSMIQFPRPRRPLQKPGDLMARHRLDLNDPVGGSAAGVGAGSAGA
RNAAGAGATAMGPADAAFFRTHDPMSYIPSDAQSVISMGTQATYPSVHLPPFGGHSAGRN
GGLGAGLNGAYASSIMSQDVDSESVAGSTAPPASITYSQSDRLRRRLSLSSMGGASDLAS
LEGYKSQGSVLDSQDDDSRSTISAAISQSSFTTF
NT seq 3345 nt   +upstreamnt  +downstreamnt
atggccgacgtcgacccctttgagcacctcgagggcgcgtccaactacggcgcagacgcc
tccgagtatggcttcaccgactctgcctccgtagtctcgggagcggactccaggctgtcc
cgcaggaacaatggcgcaaagtctggcaggaccagggcggcggaccagatcgacctcgac
ctggatctcgacctcgacctcgccgcaatcaaggatcttcagctcgacgagcacgaccta
gaaccccaccgccaccagcataccggatccaaggcggccaagccgcggagcacccgggcg
accgatggagacgaggtcgatgagctgttcgacggcatgctcgacgatggcgaggccgac
ctgcttcaaaacctgccgccccacgcctgcgcctactgcggtatccacaacccgagctgc
gtcgtcaagtgcctgatctgcaacaagtggttctgcaactcgcgaggttctacctcgggc
tcccacatcgtcaaccacctcgtcagggccaagcacaaggaggtgtgcctgcatgccgag
tcgccgctcggagagacgacgcccgagtgctaccagtgcggcgccaaaaacgtcttcctg
ctcggcttcatccccgccaagagcgagacggtcgtggtgctcctctgccgccagccgtgc
gccgccatgaccaactccaaggacgtcatctgggacacgtcgcagtggtcgccgctgatc
gaggaccgctgcttcctcacgtggctcgtcaagatgccgaccgagcacgagcagatgcgc
gcccggcccatcaccttccagcagatcaaccgcctcgaggagatgtggaaggagaacgag
aacgccaccctcgaggacctcgacaagcccggcgtcgacgaggagccggacggcattctg
ctgcgctacgaggacgcctaccagtaccagaacatctttggcccgctcgtcaagatcgag
gccgactacgaccgcaagctcaaggagagccagacgcagtcggacctggtagtgcgctgg
gaccagggtctcaaccagaaaaagattgcgtggatgacgctcccgaagctcgagagcggc
gaggtgcgcctggccgtcggcgatgagctcaagatccgctaccgcggcgagatggcgccg
ccgtgggagggggtgggccacgtcatcaagatccccaacaacgtgtccgacgaggtggcc
atcgagctgcgccgcgccgacggcgtgcccgagcactgcagccacaacttcagcgccgac
tttgtgtggaagtcgaccagcttcgaccggatgcagagcgccatgaagacgtttgccgtc
gacgagcagagcctcagcggctacatctaccacaagctgctcggccacgagatcgagagc
gccacgctgaggacggcgatgccgaagcggttcagcgcgcccggcctgcccgagctcaac
cacagccaggtcaacgcggtcaaaagcgtcctgcagaagccgctcagcctgattcagggc
ccgcccggcacgggcaagactgtcaccagcgccaccatcgtctaccagctgagcaagatg
aacccgggcccggtgctggtgtgcgccccctcgaacgtcgccgtcgaccagctgacggaa
aagatccacgccactggcctcaaggtggtgcgcctgacggccaagagccgcgaggcgctc
gacagccccatcagcttcctcacgctgcacgagcaggtggccaacaacgacacgcacgtc
gagctgcagaagctgatccagctcaagaacgagcagggcgagctcagcagcagcgacgag
cgcaagtacaaggcgctgacccgcgcgtgcgaaaaggagatcctcaacacggccgacgtc
atctgctgcacgtgcgtcggctgcggcgacccgcgcctgtcgaagctcaagttccgcacc
gtcctcatcgacgaggccacacaggcggccgagcccgagtgcatgatcccgctcgtcatg
ggctgcaagcaggttgtcttcgtcggcgaccacctccagctcggacccgtcatcatgaac
aagaaggccgcgcgcgccggcctcagccagagcctcttcgaacgcctgatcatgctcggc
aaccggcccatccgcctccaggtgcagtaccgcatgcacccttgcctttccgacttcccc
agcaacatgttctacgagggcacgctgcagaacggcgtcacggcgcccgagcggctgcgc
aagaacgtcgactttccctggcccgtgccgacgctgccgatgttcttcttccagaacctg
ggccaggaggagatctcgagctccggcacctcgttcctcaaccgcaccgaggcgtcgagc
gtcgaaaagatcgtcacgcagttcttcaaggccggcgtggtgccgtcgcaggtcggcatc
gtcacgccgtacgagggccagcgcagctacgtcgtcaaccacatgcagatgcacggcaag
ctcaagaaggagttctacaaggaggtcgaggtggccagcgtcgacgccttccagggccga
gaaaaggactacatcatcctcagctgcgtcaggagcaacgagcaccagggcatcggcttc
ctcagcgacccgaggcgcctcaacgtcgccctcacccgcgcccggtacggcctcgtgatt
ttgggcaacccgaaagtcctcaacaagcacccgctctggcactacctgctcgtccactac
aaggaaaagggctgcctggtcgagggcgtgctgtcgaacctgcagccgtcgatgatccag
ttcccgcggccgcgccgtccgctgcagaagcccggcgacctgatggcgcgtcatcggctg
gacctcaacgaccccgtcggtggctcagcggccggcgttggcgcgggctcggctggcgcg
aggaacgcagccggagcaggggccaccgccatgggccctgccgacgcggccttcttccgc
acccacgacccgatgtcgtacatcccgagcgacgcgcagagcgtcatcagcatgggtacg
caggctacctacccttcggtccacctgccgccgtttggaggccactctgccggacgcaac
ggtgggcttggcgccggcctcaatggcgcctatgccagcagcatcatgagccaggatgtc
gattcagagagcgtggccggtagcactgcaccgcccgccagcatcacgtacagccagagc
gaccggctgcgtcgtcgcctcagcctcagcagcatgggcggcgcctcggacctggctagc
ctcgagggctacaagagccaagggtcggtgctggactcgcaggacgacgactcgcgctcg
acgatctcggcggccatctcgcagtcctcgttcaccacgttctag

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