Pseudozyma flocculosa: PFL1_00650
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Entry
PFL1_00650 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03013
Nucleocytoplasmic transport
pfp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PFL1_00650
03015 mRNA surveillance pathway
PFL1_00650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_00650
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PFL1_00650
mRNA cycle factors
P-body specific factors
PFL1_00650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
19314780
NCBI-ProteinID:
XP_007876334
LinkDB
All DBs
Position
Unknown
AA seq
665 aa
AA seq
DB search
MSQAAQPAAASDSPANATKSTKSAASPAAASPAPSAASSSRSRSRRAKTDTKAPAKTSAH
SATAPDAASSTSVAATAQNSSTSAAAAATTADPNTLVKPTSTRRSRSKKDKEKSASAKQQ
KTKAKTKVVIRRLPPNVPEHIFWNSVATWVRDAAQAKALSDAARQNHDAASSQPSAAPTV
LEPTVDYKLFIPGKLKADPNKENVCSRAYVRFLDPAMLVEFHRNFDGHIFRDSKGNESIA
VVEFAPYQKTPTERRRKPDARQGTIEADEEYKNFIFSLEAKQAERTENKTDAELMAHLAQ
STEKVKDPSATKKSTPLLDHLRTLKAARAESSALAAAKSYKNPYAYQYPDEKSHPSSSSK
SASSKKSSRSSKAAAGEAGEAPAKRSSKKGEAVKEARTAESASTPASSASAPAAGAGKRA
AKAATSGRAFGAALSGALGSAAPSSARSNKATGGKGKEKAEEGGGVESGKATSAKSAPPT
RANVEPAAETSGKASRATGESTKGQGRNRGRNAAAKADAGEATAESAGSTAPSAPATPTT
APSADKKAASASSSSRRDKKSGWSSGPASGKGEEAAGGGGKMTILKRDAQTASVPTSAAA
TVESSGATGGEAREKDKERKKESSDKDKDKEKGKRRRTRPVSKGGEAAGPEKAATSAQPG
QAIWD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaggctgctcagccagcagcagcgtccgacagcccagcaaacgccacaaagtcg
accaagtccgcagcttctcccgccgccgcctctcctgcgccttctgccgcctcctcgtcc
cgctcgcgctcacgcagagccaagaccgacacaaaggcgcccgcgaaaacatctgcacac
tccgctaccgcgccagatgcagcatcgagcacctcagtagcagcgacagcgcagaacagc
tccacctcagcagcggccgccgccaccaccgccgatcccaacaccttggtcaaacccacc
agcactcgccgttcgcgatccaaaaaggacaaggaaaagagcgcatcggccaagcagcaa
aagacaaaggcaaagaccaaggtcgtcatccgccgcctgcctcccaacgtacccgaacac
atcttctggaacagcgtagccacctgggtccgcgacgccgcccaggcaaaggcgctcagc
gatgcagcgcgacagaaccacgatgccgcctccagccagccctcggccgcgccgacggtc
ctcgagcccactgtcgactacaagctcttcatcccgggcaagctgaaagccgatcccaac
aaggagaatgtctgctcgcgagcctatgtccgcttcctagaccctgccatgctggtcgag
ttccacaggaactttgacggacacatcttccgcgacagcaagggcaacgagagcattgcc
gtcgtcgagtttgccccgtaccagaagacgcccaccgaacgacgacggaagccggatgcc
aggcagggcaccatcgaggcggatgaggagtacaaaaattttatcttcagtctcgaggcc
aagcaggccgaacggactgaaaacaagaccgatgccgagctgatggctcacctcgcgcag
agcaccgaaaaagtgaaggacccatcggcgacgaaaaagtcgacgccgctgctggaccat
cttcgcacactcaaggccgcacgcgccgagtcctctgcgctcgccgctgcaaagtcctac
aagaacccgtacgcctaccagtaccccgacgaaaagtcgcatccgtcgtcgtcgtcgaag
agcgcgtcctcgaaaaagtcgagcagatccagcaaggccgcggccggagaggcgggagaa
gctccggcgaagcgatcgtcgaagaagggagaggctgtcaaggaagccaggacggccgag
tcggcttctacgcccgcctcatccgcctctgcgcctgccgccggtgcgggcaagcgcgcg
gccaaggcagcgacgagcgggcgtgcctttggagcggcgctttcgggagcactcggatcg
gccgccccgtcgtcggccagatccaacaaggcgacgggcgggaaaggcaaggaaaaggcg
gaagagggagggggcgtcgaaagcggcaaagcgaccagtgccaagtcggcgcctcctacc
cgagccaacgtcgagcctgcggcagagacaagtgggaaggccagtcgcgccactggtgaa
tcgacaaaggggcagggacgaaaccgcggtcgcaacgcagctgccaaggctgatgcgggc
gaggcgacggcggaaagcgccggcagcaccgctccatcggcgcctgcgacgccaacgacg
gcaccctccgcggacaagaaagctgcatcggcgtcgtcgtcgtcgaggcgcgacaagaaa
tcgggctggtcaagcggtcccgcctcgggcaagggcgaggaggcggcaggaggcggcggc
aagatgacgatcctgaagcgggatgcacagactgcttctgtacccaccagcgcggccgct
acggtcgaatcgtcgggcgcaaccggcggcgaagcgagggaaaaggacaaggagaggaag
aaggagagcagtgacaaggacaaggacaaggaaaaggggaagaggaggaggacgaggccc
gtctcgaaaggcggcgaggctgccggtccggaaaaggcggcgacctcggctcagcccggc
caggccatctgggactga
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