Pseudozyma flocculosa: PFL1_01432
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Entry
PFL1_01432 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03013
Nucleocytoplasmic transport
pfp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFL1_01432
09122 Translation
03013 Nucleocytoplasmic transport
PFL1_01432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_01432
03041 Spliceosome [BR:
pfp03041
]
PFL1_01432
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
PFL1_01432
Spliceosome [BR:
pfp03041
]
Complex C
Other components
EJC/TREX
PFL1_01432
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PFL1_01432
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
19315557
NCBI-ProteinID:
XP_007877125
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MSFAPEQAVAELGQCVARMVPQLLDQLAALRSDHPTTTLLPPSDVFAQLAPLASSDDVKR
AFALIPPSTAGDADAAAQTDEGLARLRNLCVEVGSNQLRDVVYQAATPPTDPAQPATAGV
GGSAQPLPQQLADDSLRSIVDRLDVVLALALQGLVDTALPLTLVEELLELNTIPTCSQLF
AYIESRVKQLTVDLHPMRGKGLVLLRLCNELLRRLSKPSHKHTVFAGRILSLLAAVFPLG
ERSGVNLRGDFNVENRTILEDQPAHDDRDGHAEGSKKVDGGGDGADEKGDDDDDKAAAIR
PDAQMYELFWSMQRFFSNPPLLMGLQDTSRQSSRTATPAPPAGSNDGGNPTPSEEDPAPD
GAKGPMSELRISTKRILALFAAVAKRERELAGAAAAENANAANQSGGAKANGSNGKAANG
TQKPAQLAIGYRAGQDTGDSATLASDEGTDSGDGPRKRERYEPDIKDGVRVSKTAKTEDD
ADGDAEMASASDDAEDRARAADLFFPKFLTGRRLLEYEIRDASFRRHILVQYLILFQYLL
SFTPVAREKWKDWKNRNLQGMFVLEEADEQWVRKVWKEVVLLLRDIPPNGRAFLDATLEV
LKREANWIRWKADSCPSIEKPPLSPDQIAAFASARASLLRPPRPYSHPLGTAALSELWAE
GFPPPVPGTRRVENDEGVYVDVATDGLEELEFLPPVPTLSHYHGMIKREEMKLNMRRRQL
GIVIDTDAAAAGPAKMSAEDADKESKDAKCQSIRETMQSLAWRALRVASDQHLHLFKQMK
EPENISALMKAIDDERNPPPPPKAKSVEAGEADDEAKKEGGEDVKESGEEAESKAEAGTE
AETAPAHEDVEAKERAAADDEAATEAAAAAVAVPVSVPEVPQSPAPAGAATEDEIESKQP
PTRGSDEAAVDASKDVDAAAVDAELGVVEEGAVKEVGSSEVSAAVEDVEMASADKA
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgccccggagcaggccgtggccgagctgggccagtgcgtcgctcgcatggtg
ccccagctgctggaccagctcgccgcgctccgatcggatcacccgacgacgacgctgctg
ccaccatcggacgtgtttgcccagctggcaccgctcgcctcttccgacgatgtcaagcgc
gcctttgccctcatcccgccatcgacggccggagacgccgacgcggcagcccagaccgac
gagggcctcgcacgtctgcgcaacctctgcgtcgaagtgggcagcaaccaactcagagac
gtcgtgtaccaggccgccaccccgcccaccgatccagctcagccggcgacagccggcgtc
ggcggcagcgcccagcccctcccgcagcagctggctgacgactcgctccgcagcatcgtc
gatcgcctagacgtcgtcctcgcactcgcgctccaaggcctcgtcgacaccgcgctgccc
ctgacgctggtcgaggaactgctcgagctcaacaccatacccacctgctcccagcttttt
gcctacattgaatcgcgcgtcaagcagctcaccgtcgatcttcacccaatgcgaggcaag
ggcctcgtcctcctccgcctctgcaatgagctccttcgccgcctctcgaagccctcccac
aagcacaccgtctttgccggaaggatcctcagccttctcgccgccgtgtttcctctggga
gaacgcagcggcgtcaacctccgcggcgacttcaacgtagagaacaggaccatcctcgag
gaccagcctgctcacgatgatcgggatgggcacgcagagggcagcaagaaggtcgacggc
ggcggtgacggcgcagacgagaagggcgatgacgacgacgacaaggccgccgccatccgt
cccgacgctcagatgtacgagctcttctggagcatgcagcgcttcttctccaaccctccg
ctcctcatgggcctccaggacacctcccggcagtcttccaggaccgccacccctgcacca
ccagccggcagcaacgatggcggcaacccgacaccgtccgaagaggacccggcgcccgac
ggtgcaaagggccccatgtccgagcttcgcatcagcaccaagcgcatcctcgccctcttt
gccgccgtggcaaagcgcgagcgggagctggcgggcgctgcggctgccgaaaacgccaat
gccgccaaccaaagcggcggcgccaaggccaacggctccaacggcaaggcggccaatggc
acgcaaaagccggctcagctcgcgatcggctaccgtgcgggccaggatacgggtgactcg
gccacgctcgcaagcgacgagggcactgactctggagacggcccgcgaaagcgcgagcgg
tacgagcccgacataaaggacggtgtccgagtcagcaagactgcgaagaccgaggacgac
gcggacggcgacgccgagatggcgtccgcgtcggacgacgccgaagaccgggcgcgggcg
gccgacctcttctttcccaagttcctgacgggccggcggctgctcgagtacgagatccgc
gacgcctcgttccgccggcacattctggtccagtacctcatcctcttccagtacctcctc
tccttcacgccggttgcgcgcgagaaatggaaggactggaagaaccgcaacctgcagggc
atgttcgtgctcgaggaggccgacgagcagtgggtgcgcaaggtgtggaaggaggtggtg
ctgttgctgcgcgacattccgcccaacggccgggcgttcctcgatgcgacgctcgaggtg
ctcaagcgcgaggcaaactggatccgctggaaggccgactcgtgcccctcgatcgagaag
ccgccgctctctcccgaccagatcgccgcattcgccagcgcccgcgcctcgctgctgcgc
ccgccgaggccctactctcatccgctcggcacggcagcgctcagcgagctgtgggccgag
ggcttcccaccccccgttcccggcacgcgtcgggtcgagaacgacgagggtgtctacgtc
gacgtggccaccgatggtctcgaggagctcgagttcctgcctcccgtgccgacgctgagt
cactaccatggcatgatcaagcgcgaggagatgaagctcaacatgcgtcgccgccagctc
ggtatcgtcatcgacaccgatgctgctgctgccgggccagcaaagatgtcggccgaggac
gcggacaaggagagcaaggacgccaagtgccagagcatccgcgagacaatgcagagcctg
gcgtggcgggcgttgcgggtggcgagcgaccagcacctgcacctgttcaagcagatgaag
gagccggagaacatctctgccctgatgaaggccatcgacgacgagcgcaacccgccaccg
ccgccaaaggcgaagtcggtcgaagccggcgaggcggacgacgaggcaaagaaggaggga
ggcgaagatgtcaaggagagcggagaggaagcggaaagcaaggccgaggcaggaacagag
gctgagacggctccggcgcacgaggatgtcgaggccaaggaacgcgcggcagccgacgat
gaagcggcgacagaagctgcagcagcggccgtggcggtgcccgtcagcgtgcccgaagtg
cctcagtctccggcgcccgccggcgcggcaaccgaggatgagatcgagtccaagcagccg
ccgacccgaggctccgacgaggctgctgtcgatgcctccaaggacgtcgatgcagccgcc
gtcgacgcggaactaggtgtcgtcgaggagggagcggtcaaagaggtggggagcagcgaa
gtctcggcggccgtcgaggatgtagagatggccagcgcagacaaggcttag
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