Pseudozyma flocculosa: PFL1_02004
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Entry
PFL1_02004 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03013
Nucleocytoplasmic transport
pfp03015
mRNA surveillance pathway
pfp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFL1_02004
09122 Translation
03013 Nucleocytoplasmic transport
PFL1_02004
03015 mRNA surveillance pathway
PFL1_02004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfp03019
]
PFL1_02004
03041 Spliceosome [BR:
pfp03041
]
PFL1_02004
03009 Ribosome biogenesis [BR:
pfp03009
]
PFL1_02004
03012 Translation factors [BR:
pfp03012
]
PFL1_02004
Enzymes [BR:
pfp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFL1_02004
Messenger RNA biogenesis [BR:
pfp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PFL1_02004
mRNA cycle factors
Stress granule specific factors
PFL1_02004
Spliceosome [BR:
pfp03041
]
Complex C
Other components
EJC/TREX
PFL1_02004
Ribosome biogenesis [BR:
pfp03009
]
Eukaryotic type
90S particles
Helicases
PFL1_02004
Translation factors [BR:
pfp03012
]
Eukaryotic type
Initiation factors
eIF-4
PFL1_02004
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
19316126
NCBI-ProteinID:
XP_007877706
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MSGINAGDNKLVFESSEEVKVAPTFDSMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRG
RDVIAQAQSGTGKTATFSISMLQSIDTTLRDTQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLDYGQHIVSGTPGRVFDMIRRRHLRTKNIKMLILDESDELLNM
GFKDQIYDVYRYLPPATQVVLLSATLPHDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRENNFQISSMHGEMQQKE
RDAIMSEFRQGSSRVLITTDVWARGIDVSNISLVINYDLPSNRENYIHRIGRSGRFGRKG
VAINFVTVEDVRILRDIEQFYSTQIDEMPVKLEDML
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaatcaacgcaggagacaacaagctcgtcttcgagagtagcgaagaggtcaag
gtcgcacccacgtttgactcgatgggcctcaaagaagacctcctccgcggcatctacgct
tacaactttgagaaaccatcggcgatccagcagcgagccattctccctatcatccgcggc
agggacgtcatcgcacaggcccagtccggcaccggaaagacggccaccttctctatctcc
atgctccagtccatcgacaccaccctccgcgacacccaggcactcgtcctaagccccaca
cgcgaactcgcgacacagatccagagcgtagtcctcgccctcggcgactacatgaacgtt
caatgccatgcttgcatcggagggacctcgatcggcgaagatatccgcaagctcgactat
ggccagcacattgtgtcgggcacgcccggacgcgtctttgacatgatccgcaggaggcac
ctccgcaccaaaaacatcaagatgctcatcctcgacgagagcgacgagctgctcaacatg
ggcttcaaggaccagatctacgacgtgtaccgctacctgccgcccgccacccaggtcgtc
ctgctctcggcgacgctgccccacgacgtactcgagatgacgaccaagtttatgacggat
ccgatccgcatcctcgtcaagcgcgacgagctgacgctggagggcatcaagcagttcttt
gtcgccgtcgaaaaggaggactggaagttcgacacgctgtgcgacctctacgacacgctc
accatcacccaggccgtcatcttctgcaacacgcggcgcaaggtcgactggctgacggaa
aagatgcgcgagaacaacttccagatcagcagcatgcacggcgagatgcagcaaaaggag
cgcgacgccatcatgagcgagttccggcagggctcgagccgcgtcctcatcacgaccgac
gtgtgggcccgcggcatcgacgtcagcaacatttccctcgtcatcaactacgatttgccc
agcaaccgagaaaactacatccaccgcatcggcagatcaggccgtttcggccgcaaggga
gtcgccatcaactttgtcacagtcgaggacgttaggattcttcgagacattgagcagttc
tacagcacccagatcgacgagatgcccgtcaagctcgaagatatgctctag
DBGET
integrated database retrieval system