KEGG   Pseudozyma flocculosa: PFL1_02004
Entry
PFL1_02004        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03013  Nucleocytoplasmic transport
pfp03015  mRNA surveillance pathway
pfp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PFL1_02004
  09122 Translation
   03013 Nucleocytoplasmic transport
    PFL1_02004
   03015 mRNA surveillance pathway
    PFL1_02004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_02004
   03041 Spliceosome [BR:pfp03041]
    PFL1_02004
   03009 Ribosome biogenesis [BR:pfp03009]
    PFL1_02004
   03012 Translation factors [BR:pfp03012]
    PFL1_02004
Enzymes [BR:pfp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PFL1_02004
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PFL1_02004
   mRNA cycle factors
    Stress granule specific factors
     PFL1_02004
Spliceosome [BR:pfp03041]
 Complex C
  Other components
   EJC/TREX
    PFL1_02004
Ribosome biogenesis [BR:pfp03009]
 Eukaryotic type
  90S particles
   Helicases
    PFL1_02004
Translation factors [BR:pfp03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    PFL1_02004
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UTP25 UvrD-helicase
Other DBs
NCBI-GeneID: 19316126
NCBI-ProteinID: XP_007877706
LinkDB
Position
Unknown
AA seq 396 aa
MSGINAGDNKLVFESSEEVKVAPTFDSMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRG
RDVIAQAQSGTGKTATFSISMLQSIDTTLRDTQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLDYGQHIVSGTPGRVFDMIRRRHLRTKNIKMLILDESDELLNM
GFKDQIYDVYRYLPPATQVVLLSATLPHDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRENNFQISSMHGEMQQKE
RDAIMSEFRQGSSRVLITTDVWARGIDVSNISLVINYDLPSNRENYIHRIGRSGRFGRKG
VAINFVTVEDVRILRDIEQFYSTQIDEMPVKLEDML
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgtcgggaatcaacgcaggagacaacaagctcgtcttcgagagtagcgaagaggtcaag
gtcgcacccacgtttgactcgatgggcctcaaagaagacctcctccgcggcatctacgct
tacaactttgagaaaccatcggcgatccagcagcgagccattctccctatcatccgcggc
agggacgtcatcgcacaggcccagtccggcaccggaaagacggccaccttctctatctcc
atgctccagtccatcgacaccaccctccgcgacacccaggcactcgtcctaagccccaca
cgcgaactcgcgacacagatccagagcgtagtcctcgccctcggcgactacatgaacgtt
caatgccatgcttgcatcggagggacctcgatcggcgaagatatccgcaagctcgactat
ggccagcacattgtgtcgggcacgcccggacgcgtctttgacatgatccgcaggaggcac
ctccgcaccaaaaacatcaagatgctcatcctcgacgagagcgacgagctgctcaacatg
ggcttcaaggaccagatctacgacgtgtaccgctacctgccgcccgccacccaggtcgtc
ctgctctcggcgacgctgccccacgacgtactcgagatgacgaccaagtttatgacggat
ccgatccgcatcctcgtcaagcgcgacgagctgacgctggagggcatcaagcagttcttt
gtcgccgtcgaaaaggaggactggaagttcgacacgctgtgcgacctctacgacacgctc
accatcacccaggccgtcatcttctgcaacacgcggcgcaaggtcgactggctgacggaa
aagatgcgcgagaacaacttccagatcagcagcatgcacggcgagatgcagcaaaaggag
cgcgacgccatcatgagcgagttccggcagggctcgagccgcgtcctcatcacgaccgac
gtgtgggcccgcggcatcgacgtcagcaacatttccctcgtcatcaactacgatttgccc
agcaaccgagaaaactacatccaccgcatcggcagatcaggccgtttcggccgcaaggga
gtcgccatcaactttgtcacagtcgaggacgttaggattcttcgagacattgagcagttc
tacagcacccagatcgacgagatgcccgtcaagctcgaagatatgctctag

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