KEGG   Pseudozyma flocculosa: PFL1_03059
Entry
PFL1_03059        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03022  Basal transcription factors
pfp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PFL1_03059
  09124 Replication and repair
   03420 Nucleotide excision repair
    PFL1_03059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfp03021]
    PFL1_03059
   03400 DNA repair and recombination proteins [BR:pfp03400]
    PFL1_03059
Transcription machinery [BR:pfp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PFL1_03059
DNA repair and recombination proteins [BR:pfp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PFL1_03059
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 19317170
NCBI-ProteinID: XP_007878766
UniProt: A0A061HA11
LinkDB
Position
Unknown
AA seq 484 aa
MASSKPAPTAEANGQNGRALTLNQQSQAAGIGSETIDDFLDRQPRSILIRLYEKPASCLA
IFRLLPIMARQLVMHMLFLQQPPSIDDLHVWIKKDGRASFQAAVEKLVRLSIVKQESVAG
RPSQILLNGVFTKGMQRALIGGGDHRSFGVPCDTEDKNAVDVAYLDEYARTKWETILHYM
VGSQGSVTPREPVLCVLRRSNLMQEGSKGSSRLSITSRGFQFLLESVNTQLWYLLLQYLD
MAEGRSFDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFRDYGLVYQRKASSRRF
YPTRLATTLTSNAATPLLASNGNEQEERGYIVLETNYRVYAYTSSPLRVAVLKLFVTVKA
RFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHPQMYRSDPLLPVTVSDQIRLWER
EKNRVGQELGALFTEFSSQADFEQVRNYADQMGVLLWQDESKRCFFVAEEGFQPVRDFIR
RRVT
NT seq 1455 nt   +upstreamnt  +downstreamnt
atggcttcgtcgaagccggccccgacggccgaagcaaacggccagaatggacgcgcactc
acgctcaaccagcagagccaggcggcgggcatcgggtcggagacgatcgacgacttcctc
gaccgccagccgcgcagcatcctcatccgactgtacgagaagcccgccagctgccttgcc
atcttccgcctcctccccatcatggcgcgtcagctcgtcatgcacatgctcttcctgcag
cagcctccgtccatagacgacctacacgtctggatcaaaaaggacggcagggccagcttc
caggccgccgtcgagaagctcgttcgcctgtccatcgtcaagcaggagtcggtagccggc
agaccctcgcagatcctgctcaacggagtcttcacaaagggcatgcagcgtgccctcatc
ggtggcggcgaccaccgatcctttggagtgccctgcgacaccgaggacaagaacgccgtc
gatgtggcctacctggacgagtacgcgcggaccaagtgggagacgatcctgcactacatg
gtcggctctcagggctccgtgacgcctcgcgagccagtcctctgcgtgctgcgccggagc
aacctgatgcaagagggcagcaagggcagcagccggctgagcatcacgtcgcggggcttc
cagttcctcctcgagtcggtcaacacgcagctatggtacctgctgctccagtatctcgac
atggctgagggtcgcagctttgacctggtcgaggtgctggctttcctcttcatgctcgga
tcgctcgagctgggccgcgactactcgaccgaggagctgcccgagacgcagctgcacatg
ctcgaagactttcgcgactacgggctggtctaccagcgcaaggcctcgagccggcgcttc
tacccgacacggctggcgactacgctgacgtcgaatgcggccacgccgctgctggcgtcg
aacggcaacgagcaggaggagcggggctacattgtcctcgagaccaactaccgcgtctac
gcatacacgagcagcccgctgcgcgttgcggtgctgaagctgtttgtcacggtcaaggcg
cggttccccaacctggtcgtcggctccatcacgcgcgacagcgtcaagagcgcgctggcc
aacggcatcacggcagagcagattatcacgtatctcacgcaccacgcgcacccgcagatg
taccggagcgacccgctgctgccggtgacggtgtcagaccagatccggctgtgggagcgc
gaaaagaaccgggtgggccaggagctgggcgcgctcttcaccgagttttcgtcgcaggcc
gactttgagcaggtgcgcaactacgccgaccagatgggcgtgctcctgtggcaggacgag
tccaagcgctgcttctttgtcgccgaagaaggattccagccggtgcgcgactttatcagg
cgcagggtcacgtag

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