Pseudozyma flocculosa: PFL1_03059
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Entry
PFL1_03059 CDS
T03141
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pfp
Pseudozyma flocculosa
Pathway
pfp03022
Basal transcription factors
pfp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PFL1_03059
09124 Replication and repair
03420 Nucleotide excision repair
PFL1_03059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfp03021
]
PFL1_03059
03400 DNA repair and recombination proteins [BR:
pfp03400
]
PFL1_03059
Transcription machinery [BR:
pfp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PFL1_03059
DNA repair and recombination proteins [BR:
pfp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PFL1_03059
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
19317170
NCBI-ProteinID:
XP_007878766
UniProt:
A0A061HA11
LinkDB
All DBs
Position
Unknown
AA seq
484 aa
AA seq
DB search
MASSKPAPTAEANGQNGRALTLNQQSQAAGIGSETIDDFLDRQPRSILIRLYEKPASCLA
IFRLLPIMARQLVMHMLFLQQPPSIDDLHVWIKKDGRASFQAAVEKLVRLSIVKQESVAG
RPSQILLNGVFTKGMQRALIGGGDHRSFGVPCDTEDKNAVDVAYLDEYARTKWETILHYM
VGSQGSVTPREPVLCVLRRSNLMQEGSKGSSRLSITSRGFQFLLESVNTQLWYLLLQYLD
MAEGRSFDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFRDYGLVYQRKASSRRF
YPTRLATTLTSNAATPLLASNGNEQEERGYIVLETNYRVYAYTSSPLRVAVLKLFVTVKA
RFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHPQMYRSDPLLPVTVSDQIRLWER
EKNRVGQELGALFTEFSSQADFEQVRNYADQMGVLLWQDESKRCFFVAEEGFQPVRDFIR
RRVT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcgaagccggccccgacggccgaagcaaacggccagaatggacgcgcactc
acgctcaaccagcagagccaggcggcgggcatcgggtcggagacgatcgacgacttcctc
gaccgccagccgcgcagcatcctcatccgactgtacgagaagcccgccagctgccttgcc
atcttccgcctcctccccatcatggcgcgtcagctcgtcatgcacatgctcttcctgcag
cagcctccgtccatagacgacctacacgtctggatcaaaaaggacggcagggccagcttc
caggccgccgtcgagaagctcgttcgcctgtccatcgtcaagcaggagtcggtagccggc
agaccctcgcagatcctgctcaacggagtcttcacaaagggcatgcagcgtgccctcatc
ggtggcggcgaccaccgatcctttggagtgccctgcgacaccgaggacaagaacgccgtc
gatgtggcctacctggacgagtacgcgcggaccaagtgggagacgatcctgcactacatg
gtcggctctcagggctccgtgacgcctcgcgagccagtcctctgcgtgctgcgccggagc
aacctgatgcaagagggcagcaagggcagcagccggctgagcatcacgtcgcggggcttc
cagttcctcctcgagtcggtcaacacgcagctatggtacctgctgctccagtatctcgac
atggctgagggtcgcagctttgacctggtcgaggtgctggctttcctcttcatgctcgga
tcgctcgagctgggccgcgactactcgaccgaggagctgcccgagacgcagctgcacatg
ctcgaagactttcgcgactacgggctggtctaccagcgcaaggcctcgagccggcgcttc
tacccgacacggctggcgactacgctgacgtcgaatgcggccacgccgctgctggcgtcg
aacggcaacgagcaggaggagcggggctacattgtcctcgagaccaactaccgcgtctac
gcatacacgagcagcccgctgcgcgttgcggtgctgaagctgtttgtcacggtcaaggcg
cggttccccaacctggtcgtcggctccatcacgcgcgacagcgtcaagagcgcgctggcc
aacggcatcacggcagagcagattatcacgtatctcacgcaccacgcgcacccgcagatg
taccggagcgacccgctgctgccggtgacggtgtcagaccagatccggctgtgggagcgc
gaaaagaaccgggtgggccaggagctgggcgcgctcttcaccgagttttcgtcgcaggcc
gactttgagcaggtgcgcaactacgccgaccagatgggcgtgctcctgtggcaggacgag
tccaagcgctgcttctttgtcgccgaagaaggattccagccggtgcgcgactttatcagg
cgcagggtcacgtag
DBGET
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