Pseudomonas fluorescens SBW25: PFLU_1726
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Entry
PFLU_1726 CDS
T00899
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD (EC (Cold-shock DEAD box protein A)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfs
Pseudomonas fluorescens SBW25
Pathway
pfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLU_1726 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfs03019
]
PFLU_1726 (deaD)
03009 Ribosome biogenesis [BR:
pfs03009
]
PFLU_1726 (deaD)
Enzymes [BR:
pfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLU_1726 (deaD)
Messenger RNA biogenesis [BR:
pfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLU_1726 (deaD)
Ribosome biogenesis [BR:
pfs03009
]
Prokaryotic type
rRNA helicases
PFLU_1726 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
CAI2796008
UniProt:
C3K6M2
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All DBs
Position
1:1891876..1893549
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AA seq
557 aa
AA seq
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MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattctcgctgcc
gtcatcgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcattgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtaaccgttgtggccgtttacggcggcgcgcctatgggcccacaactcaaa
gctatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcttgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccaccgacc
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgtaccaagcaagcgaccctggac
ctggccagtgccctggaagcgaaaggctataaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggtctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggccagaaagttgccgaagtccgcctgccggatgcccaggcagtcctg
gatgctcgcatcaagaaactgaccaacagcctggcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagctctgctgcgcaaagccaccaacggtcaggccctgaccctggcagccatcgag
aaagaacgtccactggttccgaacaacgcgccacgcggtgatcgtccagagcgtaccggc
gaccgtccggaccgtggtgaccgtgagcgtcgcgctccggtgccactggctgaaggccgt
gctcgctgccgtaccgcgctgggcgcgcgtgatggcatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctgaccaagctgaaa
gacacccgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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